Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24690 278 / 4e-87 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085700 [exp] 711 / 0 AT4G24690 497 / 2e-166 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.015G084000 [exp] 579 / 0 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017950 [exp] 305 / 5e-97 AT4G24690 536 / 0.0 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10043320 [exp] 258 / 2e-78 AT4G24690 290 / 1e-86 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10019471 [exp] 169 / 7e-48 AT4G24690 173 / 3e-47 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type CL0159 [poplar] [flax] E-set PF16158 [poplar] [flax] N_BRCA1_IG Ig-like domain from next to BRCA1 gene
Representative CDS sequence Show only first row Show all	>Potri.012G085450.1 pacid=42784358 polypeptide=Potri.012G085450.1.p locus=Potri.012G085450 ID=Potri.012G085450.1.v4.1 annot-version=v4.1 ATGCTAGAAGACTTGCCAAATTCAAACTCACCTTTCAAAACCAGCCAGGAAGAGAGCTTTGAAAATGTTACCAGGACTTCAGCGGCACCACACACGGCTG TCTCTGCTCCTGTTATTCTGAATGGGAACCCTCAAGCTTCCAATCCGTTTGCACATTGTGCTCCCCTTGCATCACAAGTCCCTGCTGGTGATGATGGGAA GGAAGCCAAGAAACAGAATACCTGTCTTCCAACTAGGAAGCCTAATCCCTTTGGTTTGCCCACCTTTCCTATGAATTACGGCTTCCCTTCACCCACTGAT TTTCCATTTAGTGGAGTGCCTGTGGAAAATGACTCAGCTCTGCGTTCTCCAAAAAGTCATGCAATTAAGAGAAGCGACTGCGTCAATAATCCCATGGTTG GCATGTTTCATAGGGGTGTTCAATGCGATGGATGTGGTGTTCATCCAATTACTGGACCTCGGTACACGTCCAAAGTGAAAGAAGATTATGATCTCTGCAG TATCTGCTTTGCTGCCATGGGTAATGAAGCTGATTACATAAAGATGGACAGGCCGATGTCTTGCCGTAATCCTTGGTCTTCCAAGTGTTTCAATGATCCT ACACAGAAATCTTTGGCCTTCCCACAGCCTCTCTACAAAGGCTCCTGTGGAGTAAAGGGAGGTCAACCTAAGCTAGACAGCCGTTTTGTTTTGGATGTCA ATGTCTCAGACGGTACTGTGATGCCTTCATCTACACCCTTTACCAAGATATGGCGAATGCGCAACAGTGGTAGTGTTGCATGGCCCCAGGGAGTGCGGCT TGTGTGGATTGGTGGAGACCAGTTCTTCAGCGCTGATTCTGTTGAGATAGAGATTCCAGTCAATGGCGTGCCTATTGATGGTGAACTTGATATTGCAGCT GATTTTGTATCTCCTGCTCTGCCTGGTAGATACATATCATATTGGAAGATGGCACACCCATCAGGTGTGAAATTTGGACAGCGCATCTGGGTTCTTATTG AGGTTGATGCTTCCCTGAAAGATCCGTCCTTCAAAGATCTGAACTTGAATGAGTCCCCCAATTGGAGTGGCTCTAAATGCCATGAAGATTTGGAAAGAAT AAGCACTGCCCGATTGTTGATCATGTTGAAGGAACGGGTAAAATTTACCTAG
AA sequence Show only first row Show all	>Potri.012G085450.1 pacid=42784358 polypeptide=Potri.012G085450.1.p locus=Potri.012G085450 ID=Potri.012G085450.1.v4.1 annot-version=v4.1 MLEDLPNSNSPFKTSQEESFENVTRTSAAPHTAVSAPVILNGNPQASNPFAHCAPLASQVPAGDDGKEAKKQNTCLPTRKPNPFGLPTFPMNYGFPSPTD FPFSGVPVENDSALRSPKSHAIKRSDCVNNPMVGMFHRGVQCDGCGVHPITGPRYTSKVKEDYDLCSICFAAMGNEADYIKMDRPMSCRNPWSSKCFNDP TQKSLAFPQPLYKGSCGVKGGQPKLDSRFVLDVNVSDGTVMPSSTPFTKIWRMRNSGSVAWPQGVRLVWIGGDQFFSADSVEIEIPVNGVPIDGELDIAA DFVSPALPGRYISYWKMAHPSGVKFGQRIWVLIEVDASLKDPSFKDLNLNESPNWSGSKCHEDLERISTARLLIMLKERVKFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Potri.018G004500 [exp]	3.00	0.8549
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	6.48	0.8654
AT5G05800			unknown protein		Potri.001G238000 [exp]	8.24	0.8899
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	9.64	0.8779
					Potri.017G065250 [exp]	11.48	0.8454
					Potri.017G046700 [exp]	14.89	0.8655
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	18.33	0.8440
AT5G05800			unknown protein		Potri.001G195601 [exp]	21.02	0.8454
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	24.49	0.8259
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	26.55	0.7955

Compare expression of checked genes

Potri.012G085450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.