Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11330 428 / 6e-146 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 409 / 2e-138 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 319 / 7e-104 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G26500 296 / 7e-95 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT2G19330 160 / 2e-44 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G26050 157 / 6e-43 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G29880 145 / 6e-39 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT4G35470 149 / 7e-39 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 138 / 3e-35 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 91 / 3e-19 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083800 [exp] 667 / 0 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 346 / 2e-114 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.018G139700 [exp] 167 / 5e-47 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 166 / 2e-46 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.005G098600 [exp] 150 / 3e-39 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 145 / 1e-37 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 143 / 7e-37 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 143 / 7e-37 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.011G121700 [exp] 89 / 1e-18 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017948 [exp] 474 / 1e-163 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 431 / 3e-148 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 155 / 2e-42 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10035976 [exp] 157 / 1e-41 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 159 / 3e-41 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 135 / 4e-34 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 115 / 2e-29 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10035622 [exp] 81 / 6e-18 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 74 / 1e-14 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 73 / 3e-14 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G085600.1 pacid=42784084 polypeptide=Potri.012G085600.1.p locus=Potri.012G085600 ID=Potri.012G085600.1.v4.1 annot-version=v4.1 ATGGATCCGAACCCGAAAACCCACCCGATTCTCTCTTACGTCATGGCCCGACTTCCCTCTCTCGGACCCAAACCCCCTGACCTCTCCTTCGACATCGAGC AACCTCCACAGCCACCACCACAACAACAACCACCACCGCTTCCCCAATTAACTGACCCAGCCCTCCTCTCTTCTATGAGACGCGCTGTTGGCGATGTAGC CCAAACCCGATCGATACTCCAAACCCTAGGCCCCCGACCCGACCACGAAACTGTCGACGCTGCGAAACTCAAAGTAAGCGAAATCGAGAGCAATCTATCG AAAGAATTGGAGGATCTTGTGCTTTCTCAGCGGTCGAGTGAGATTGATAGGTTAGAGTGGAGGGCGCATTTGGCTGAGAAAGAAAAGAAGATTCGAGAAG AGGCGGAGAAAGAGAGAGGGTTTTATAAAATGGTGTTGCAATTGGATGAAATGCACGAGGAGTATGAGAAGTTGTTGAAGGAAGCGGAGGAAAGATTGGT GAAGATTTATGAGAAGGCGGAGCGAGGAGGGGAGGAAGAAGAGGAGGTGGTGGTGGAGGAGGAGGAGGAGGTGAGTGAGGAGGTCGTGGGAGTTTTGAGA GAGGGGAGTGGAAAAGGGATGGAAAGAGTGGATTTGTCGAATCGGAGACTCAGAATTTTACCTGAGGCATTTGGGAGGGTTGTTGGCTTGAAAGTGCTTA ATCTTTCCAATAATCAACTTGAGGTCATTCCGGATTCTATAGCTGGGTTAGAAATTCTCGAGGAGCTCATTCTTGCTTCAAATCTCTTAGAAGCATTGCC AGATTCAATTGGATTACTGCAAAACTTGAAAATCCTGGATGTCTCTAGCAACAAGATAGAGATCTTGCCTGACACCATTTGTCATTGCAGGTCATTGCTG GAATTGGATGTGAGCTTCAACCGCCTGACATACTTGCCGACTAATATTGGATATGAAATGTTGAATCTTCAGAGGCTTTCGATCCAGCTGAACAAGATTT GTTCCCTTCCCACTTCTATTTGTGAGATGAGATTTCTGTGCCACCTGGATGCTCATTTCAATGAGCTTCGTGGCCTTCCTCTTGCTATTGGGAATCTGGC AAATCTAGAGATCCTCAATTTGAGCAGTAATTTCAGTGACCTGAAAGAACTCCCTGAAACTTTTGGTGATTTGATGAACCTCAAGGAACTTGATCTTAGC AACAACCAGATATCAGCTCTGCCTGATACATTTGGTCGGCTGGATAACTTGACCAAGCTCAACTTGGACCAAAATCCTCTTGTAATTCCGCCAGCAGAAG TGGTTAAGGAAGGGGTCGAGGCTGTGAAGACTTTTATGGCTAAGAGGTGGCTTGACATATTGGTGGAGGAAGAAAGGAAGAGTATGCTTGAAGTACAAGA ACAGGCACAGACTGGATGGTTGACACGCAGCACCTCTTGGTTGAAAACTTACGCATCTGGTGTTTCCGAGACTGTTTCAGGAATCTTAAGTCCGAGAGGT CCTAGAGATCCTTATCTTGATCAACAGCTTTGA
AA sequence Show only first row Show all	>Potri.012G085600.1 pacid=42784084 polypeptide=Potri.012G085600.1.p locus=Potri.012G085600 ID=Potri.012G085600.1.v4.1 annot-version=v4.1 MDPNPKTHPILSYVMARLPSLGPKPPDLSFDIEQPPQPPPQQQPPPLPQLTDPALLSSMRRAVGDVAQTRSILQTLGPRPDHETVDAAKLKVSEIESNLS KELEDLVLSQRSSEIDRLEWRAHLAEKEKKIREEAEKERGFYKMVLQLDEMHEEYEKLLKEAEERLVKIYEKAERGGEEEEEVVVEEEEEVSEEVVGVLR EGSGKGMERVDLSNRRLRILPEAFGRVVGLKVLNLSNNQLEVIPDSIAGLEILEELILASNLLEALPDSIGLLQNLKILDVSSNKIEILPDTICHCRSLL ELDVSFNRLTYLPTNIGYEMLNLQRLSIQLNKICSLPTSICEMRFLCHLDAHFNELRGLPLAIGNLANLEILNLSSNFSDLKELPETFGDLMNLKELDLS NNQISALPDTFGRLDNLTKLNLDQNPLVIPPAEVVKEGVEAVKTFMAKRWLDILVEEERKSMLEVQEQAQTGWLTRSTSWLKTYASGVSETVSGILSPRG PRDPYLDQQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.012G085600 [exp]	0	1
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	5.65	0.7115
AT2G26920			Ubiquitin-associated/translati...		Potri.001G225200 [exp]	7.48	0.6678
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	7.74	0.6874
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	16.97	0.6077
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.004G072200 [exp]	17.60	0.6767
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	17.97	0.6573
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	18.00	0.7111
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	19.59	0.6794
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	34.46	0.6786
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.001G399400 [exp]	34.77	0.6183	Pt-PPI1.4

Compare expression of checked genes

Potri.012G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.