Plant FIBer expression Database

Potri.012G085700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24690 497 / 2e-166 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
AT3G24800 42 / 0.001 PRT1 proteolysis 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G084000
[exp]
1105 / 0 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Potri.012G085450
[exp]
707 / 0 AT4G24690 279 / 2e-87 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017950
[exp]
540 / 0 AT4G24690 536 / 0.0 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Lus10043320
[exp]
357 / 5e-111 AT4G24690 290 / 1e-86 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Lus10019471
[exp]
166 / 5e-44 AT4G24690 173 / 3e-47 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00564 PB1 PB1 domain
CL0006 C1 PF00569 ZZ Zinc finger, ZZ type
CL0159 E-set PF16158 N_BRCA1_IG Ig-like domain from next to BRCA1 gene
Representative CDS sequence
>Potri.012G085700.7 pacid=42783378 polypeptide=Potri.012G085700.7.p locus=Potri.012G085700 ID=Potri.012G085700.7.v4.1 annot-version=v4.1
ATGGATTCTACTATGGTCATCAAGGTTAAATATGGTGATACGCTTAGGCGTTTTAATGCTCATGTGAAGGAGAATGAGCAACTCGATCTTGACATGACTG
CACTGAGGGCAAAAATCCTCCGTCTTTTTAATTTTCCTGCTGACTGTGATCTCGCTTTAACTTATATTGATGAAGACGGGGATGTGGTAACACTTGCTGA
TGATGATGATCTACGTGATGTGATGAGGCAAAACTTGAAATTTTTGAGGATTGATGTACAGCTTAATAATGACAAGTTCGGTAAATCTTATGCCAGATCT
AGTGGTAGTTCCACCCCTATGAGGTCCCCTCGAGTCCAGAGTCCATTGCCATGTCTCAACAATGGTGTTGCTGAAGTTTTGAAATCTGTGCCTGAGCCCC
TACGAGGCATACTTTCCAAGATATCTCATGACCTGGCTTCAAAAGCTGTGGCATCCAATGCAGTGCGTACTGAGCTTGTTGACTGCTTTTCAAAGATGGG
GCAATCCCATTTGAACCCAGCCCCCCAGTCTGAAGATGGTGCAGGTTCAAGTGTCCAAACTGGAGCTGCTGTTCCTACAGTTGTTAATGCATCCAAGGAT
ATGGGTATGCTAGAAGACTTGCCAAAGTCAAACTCACCTTTCAAAACCAGCCAGGAAGAGAGCTTTGAAAATGTTACCAGGACTTCAGCGGGACCACACA
CAGCTGTCTCTGCTCCTGTTAATCTGAATCGGAACCCTCAAGCTTCCAATCCATCTGCACATTGTGCTCCCCTTGCATCATTTGTCCCTGCTGGTGATGA
TGGGAAGGAAGCCAAGAAACAGAATACCTGTCGTCCTACTAGGAAGCCTGTTCCCTTTGGTTTGCCCACCTTTCCTATGAATTACGGCTTTCCTTCACAC
ACTGATTTTCCATTTAGTGGAGTGGCTGTGGAAAATGACTCAGCTGTGCGTTCTCCAAAAAGTCATGCAATTAAGAGAAGCGACTATGTCAATAATCCCA
TGTTTGGCATGTTTCATAGGGGTGTTCAATGCGATGGATGTGGTGTTCATCCAATTACTGGACCTCGGTACAAGTCCAAAGTGAAAGAAGATTATGATCT
CTGCAGTATCTGCTTTGCTGCCATGGGTAATGAAGCTGATTACATAAAGATGGACAGGCCGATGTCTTGCCGTAATCCTTGGTCTTCCAAGTGTTTCAAT
GATCCTAAATCTTTGGCCTTCCCACAGCCTCTCTACAAAGGTTCTTGTGGAGTAAAGGGAGCTCAACCTAAGCTAGACAGCCGTTTTGTTTTGGATGTCA
ATGTCTCAGACGGTACTGTGATGCCTTCATCTACACCCTTTACCAAGATATGGCGAATGCGCAACAGTGGTAGTGTTGTATGGCCCCAGGGAGTGCGGCT
TGTGTGGATTGGTGGAGACCAGTTCTTCAGCGCTGATTCTGTTGAGATAGAGATTCCAGTCAATGGCGTGCCTATTGATGGTGAACTTGATATTGCAGCT
GATTTTGTAGCTCCTGCTCTGCCTGGTAGATACATATCTTATTGGAAGATGGCACACCCATCAGGTGTGAAATTTGGACAGCGCATCTGGGTTCTTATTG
AGGTTGATGCTTCCCTGAAAGACCCATTCTTCAAAGATCTGAACTTGAATGAGTCCCCCAATTGGAGTGGTTCTAAATGCCCTGAAGATTTAGATATGAA
TGCCCAGCCTGCTGATGGCTGTTTTCTGGGGCCTCAGAATACTACCTCGCTTTCAGAACCAGTAGAGCCCATGGTTGCCGAACAGCCTAAGAGCCAGGAG
TTGTTTCCTATTGATGACGCCTTGCCGGTTGGGCATGGTGTTTTAGCCTCTGCTCCTCCAGAGGCCAGCGCTTCATCTGTTCCTGTTTTATATCCAATGA
TAGACATTTCTGAACCAGTTCCTGTTTTATATCCAATGATAGACATTTCTGAAACAGCGACTACTGGTCCTTTTGAACCCCTTCCTGCTGTGGATGCTCC
AGCTTCGTCTGAAGGAGTCAACATGGAAAGTGTTGTTGAGAAGACCCTCCTAAAGGATCTTGAGGAAATGGGCTTCAAGCAGGTTGATTTGAACAAAGAG
ATCTTGAGGCGAAATGAGTATGATCTAGAGCAGTCAGTGGATGATCTTTGCGGCTTTGCGGAGTGGGACCCCATTCTTGAGGAGCTGCAAGAGATGGGTT
TCAGTGACAAGGAAATGAACAAGAAGCTGCTAAAGAAAAACAATGGGAGTATCAGGGGTGTGGTCATGGATATTCTCACCGGGGAGAAGGCTTAG
AA sequence
>Potri.012G085700.7 pacid=42783378 polypeptide=Potri.012G085700.7.p locus=Potri.012G085700 ID=Potri.012G085700.7.v4.1 annot-version=v4.1
MDSTMVIKVKYGDTLRRFNAHVKENEQLDLDMTALRAKILRLFNFPADCDLALTYIDEDGDVVTLADDDDLRDVMRQNLKFLRIDVQLNNDKFGKSYARS
SGSSTPMRSPRVQSPLPCLNNGVAEVLKSVPEPLRGILSKISHDLASKAVASNAVRTELVDCFSKMGQSHLNPAPQSEDGAGSSVQTGAAVPTVVNASKD
MGMLEDLPKSNSPFKTSQEESFENVTRTSAGPHTAVSAPVNLNRNPQASNPSAHCAPLASFVPAGDDGKEAKKQNTCRPTRKPVPFGLPTFPMNYGFPSH
TDFPFSGVAVENDSAVRSPKSHAIKRSDYVNNPMFGMFHRGVQCDGCGVHPITGPRYKSKVKEDYDLCSICFAAMGNEADYIKMDRPMSCRNPWSSKCFN
DPKSLAFPQPLYKGSCGVKGAQPKLDSRFVLDVNVSDGTVMPSSTPFTKIWRMRNSGSVVWPQGVRLVWIGGDQFFSADSVEIEIPVNGVPIDGELDIAA
DFVAPALPGRYISYWKMAHPSGVKFGQRIWVLIEVDASLKDPFFKDLNLNESPNWSGSKCPEDLDMNAQPADGCFLGPQNTTSLSEPVEPMVAEQPKSQE
LFPIDDALPVGHGVLASAPPEASASSVPVLYPMIDISEPVPVLYPMIDISETATTGPFEPLPAVDAPASSEGVNMESVVEKTLLKDLEEMGFKQVDLNKE
ILRRNEYDLEQSVDDLCGFAEWDPILEELQEMGFSDKEMNKKLLKKNNGSIRGVVMDILTGEKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.012G085700
[exp]
0 1
AT5G24240 Phosphatidylinositol 3- and 4-... Potri.015G013600
[exp]
1.00 0.8945
AT2G26970 Polynucleotidyl transferase, r... Potri.001G222300
[exp]
2.00 0.8737
AT4G21800 QQT2 quatre-quart2, P-loop containi... Potri.010G148000
[exp]
2.23 0.8583
Potri.001G371500
[exp]
2.82 0.8882
AT1G32260 unknown protein Potri.003G095600
[exp]
5.19 0.8838
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.008G104400
[exp]
6.16 0.8247
AT3G22370 AtHSR3, ATAOX1A... hyper-sensitivity-related 3, a... Potri.012G001500
[exp]
7.34 0.8414
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.010G237100
[exp]
8.48 0.8251
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.019G036340
[exp]
10.19 0.8368
AT1G80040 unknown protein Potri.005G121100
[exp]
10.24 0.8310

Potri.012G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.