Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24700 70 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086000 [exp] 236 / 3e-81 AT4G24700 73 / 4e-17 unknown protein Potri.015G084200 [exp] 180 / 8e-59 AT4G24700 88 / 6e-23 unknown protein Potri.004G085100 [exp] 44 / 8e-06 AT5G37550 80 / 2e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041942 [exp] 80 / 2e-19 AT4G24700 65 / 7e-14 unknown protein Lus10017951 [exp] 76 / 8e-18 AT4G24700 68 / 5e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G086300.2 pacid=42784277 polypeptide=Potri.012G086300.2.p locus=Potri.012G086300 ID=Potri.012G086300.2.v4.1 annot-version=v4.1 ATGGCCAAGAGTGAACTTTGTTGCATAATTAAGTTACCACTAAGCATGAAGAACAGGTCAGAGCATGAAGATGATGATAAGCATGAACTTGAAATCCTCA AGGGTGTGGCACAATCGTGGCATGCTCACTCGGGCAGTTCAAGGTCTACCAGCTGTGAATATGATAAATATCGCCAAAATTTTCAAAGCAAGCCTTCTCG GTTTAAGCTGGAAGCAATGAACAAGTCATCAGCCAAGAGGGTTGAGAGAGGAAATTGGGATTTCAAGCAATCACTGTGGGATTCCTATGAGATTGTGAAT GTGTACAAAAGGTTGGAGAGAGGGCTTGTTTTAGATGATTCATTTAGTGGGGTAGATGCTCAGAGAAGGGTCCATAGGAAGAAAAGAGAGAGTAGTTTTC CCACTTGCCTTGTAGGAAAACCAAGCAAATTCTTATCTTGTGCTTTCAGTGAGAAGTATTTTCATAGAAATCTCATGCTACAAGTACCTGCGTTGTCATG A
AA sequence Show only first row Show all	>Potri.012G086300.2 pacid=42784277 polypeptide=Potri.012G086300.2.p locus=Potri.012G086300 ID=Potri.012G086300.2.v4.1 annot-version=v4.1 MAKSELCCIIKLPLSMKNRSEHEDDDKHELEILKGVAQSWHAHSGSSRSTSCEYDKYRQNFQSKPSRFKLEAMNKSSAKRVERGNWDFKQSLWDSYEIVN VYKRLERGLVLDDSFSGVDAQRRVHRKKRESSFPTCLVGKPSKFLSCAFSEKYFHRNLMLQVPALS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24700			unknown protein		Potri.012G086300 [exp]	0	1
AT5G01015			unknown protein		Potri.006G113700 [exp]	3.46	0.9089
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.003G122000 [exp]	4.89	0.9145
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	8.60	0.9305
ATCG00220		ATCG00220.1, PS...	photosystem II reaction center...		Potri.013G142100 [exp]	9.79	0.9049
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	12.24	0.9285
					Potri.002G109400 [exp]	13.63	0.9200
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.014G122700 [exp]	15.49	0.8932
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Potri.014G139300 [exp]	19.05	0.8695
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G117200 [exp]	21.00	0.9139
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	25.69	0.9037

Compare expression of checked genes

Potri.012G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.