Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24710 712 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G53230 84 / 7e-17 ATPase, AAA-type, CDC48 protein (.1) AT2G27600 81 / 3e-16 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G56690 80 / 1e-15 CIP111 Cam interacting protein 111 (.1) AT5G19990 79 / 1e-15 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 79 / 1e-15 RPT6A AAA-type ATPase family protein (.1) AT5G03340 79 / 4e-15 ATPase, AAA-type, CDC48 protein (.1) AT5G52882 78 / 6e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58290 77 / 6e-15 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G19740 77 / 7e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084900 [exp] 847 / 0 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G144300 [exp] 87 / 3e-18 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 84 / 3e-17 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 83 / 5e-17 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G035000 [exp] 84 / 8e-17 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.016G091600 [exp] 83 / 1e-16 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 83 / 1e-16 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G022216 [exp] 82 / 1e-16 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 80 / 6e-16 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019473 [exp] 718 / 0 AT4G24710 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043321 [exp] 718 / 0 AT4G24710 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020589 [exp] 81 / 4e-16 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 81 / 5e-16 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 80 / 8e-16 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10021441 [exp] 79 / 2e-15 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10017762 [exp] 79 / 2e-15 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10023018 [exp] 79 / 3e-15 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10013429 [exp] 79 / 5e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10002639 [exp] 78 / 5e-15 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.012G086400.1 pacid=42783303 polypeptide=Potri.012G086400.1.p locus=Potri.012G086400 ID=Potri.012G086400.1.v4.1 annot-version=v4.1 ATGACAACAAGTCCCAGTCCCATGGACATAACGATCCAAAACCCCATTGAAACCACAGCCATAAGCCATGATCTATCCGATGGTAATGGCGTGGCTTTGC CCTCCTCTTCCCCTTCCCCCATTCTTACCCATCGCAAATTCCTCGTTTCTGTTGAAGTTTGCTTAAAACCCTCAAGCACAGCTCGCGTTGAAGATGTGCG GTTAGCCGTAGAAAGAATGCTTGAAAAGAGGAGTTTAAGCTATGTTGATGGACCCATTCCTGTGCCATTTGATGACCAATTTCTCTTTGAAAATGTACAA AGAATCTGCGTTTGCGATACGGATGAATGGGTGACCAACCATGATATTCTTCTGTTCTGGCAAGTCAAACCTGTTGTACATGTCTTTCAGCTCAGCGAGG AAGGACCGTGTGAGGAGCTAGGTGGGGATGGCCAACTTTCTAGCTTTAATGAGTGGATTCTTCCAGCTAAGGAATTTGATGGCATGTGGGAAAGCTTAAT TTATGAATTTGGTCTCAAGCAAAGGTTATTGCGGTATGCAGCCAGTGCATTGTTCTTTACTGAAAAGGGTGTTGATCCTTTTCTTGTTTCATGGAATCGC CTTATTCTTTTACATGGACCTCCAGGGACGGGGAAGACTTCTTTATGTAAAGCATTGGCTCAGAAGCTATCAATACGATTTAACTCCAGATACCCCCAAT GCCAATTGATTGAAGTTAATGCTCATTCTTTGTTTAGCAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAACTTTTCCAGAAAATACAGGAAATGAT AGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTCGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCT ATTCGAGTTGTGAATGCTCTACTAACACAGATGGACAAATTGAAAACATCACCAAATGTGATCATCCTGACTACATCAAATATAACTGCTGCTATTGATA TTGCATTTGTTGATCGAGCTGACATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGTTATGAAATTCTAAGATCCTGTTTGCAAGAACTCCTGCG AACAGGAATAATATCAAATTTCCAGGACTCTGACTATCTCATGCTTCCAAATTATTCAACCTTGAGAGAGAAATTAAACGCACCAGATATTCAGGAAGCT CAGCCTGTGCTGCCCTTTTGTAAGCAATTGCTTGAAGCTGCGGAAGCATGTGAGGGAATGAGTGGAAGATCATTGAGAAAACTTCCATTTTTGGCACACG CAGCTCTTTCAAATCCAAACAGTTGTGATGCTAGTGAATTCTTGTGCGCAATGATAGATACAGCAAGGAGGGAGCACTCTGAGCTACCTGAATCCTGA
AA sequence Show only first row Show all	>Potri.012G086400.1 pacid=42783303 polypeptide=Potri.012G086400.1.p locus=Potri.012G086400 ID=Potri.012G086400.1.v4.1 annot-version=v4.1 MTTSPSPMDITIQNPIETTAISHDLSDGNGVALPSSSPSPILTHRKFLVSVEVCLKPSSTARVEDVRLAVERMLEKRSLSYVDGPIPVPFDDQFLFENVQ RICVCDTDEWVTNHDILLFWQVKPVVHVFQLSEEGPCEELGGDGQLSSFNEWILPAKEFDGMWESLIYEFGLKQRLLRYAASALFFTEKGVDPFLVSWNR LILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEENNLVFVLIDEVESLAAARKAALSGSEPSDS IRVVNALLTQMDKLKTSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLRTGIISNFQDSDYLMLPNYSTLREKLNAPDIQEA QPVLPFCKQLLEAAEACEGMSGRSLRKLPFLAHAALSNPNSCDASEFLCAMIDTARREHSELPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24710			P-loop containing nucleoside t...		Potri.012G086400 [exp]	0	1
AT3G05910			Pectinacetylesterase family pr...		Potri.005G001500 [exp]	15.81	0.7652
AT1G63850			BTB/POZ domain-containing prot...		Potri.003G131000 [exp]	35.84	0.6652
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	38.53	0.7763
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Potri.016G125600 [exp]	42.42	0.6873
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	45.05	0.7715
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Potri.011G062100 [exp]	53.31	0.7607
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.008G062000 [exp]	67.30	0.7429
AT3G23740			unknown protein		Potri.002G236300 [exp]	84.03	0.7400
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Potri.009G040900 [exp]	99.52	0.7126	Pt-PCNA.1
AT5G65360			Histone superfamily protein (....		Potri.005G233900 [exp]	100.48	0.7268

Compare expression of checked genes

Potri.012G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.