Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11630 204 / 4e-66 Ribosomal protein L19 family protein (.1) AT5G11750 204 / 4e-66 Ribosomal protein L19 family protein (.1) AT1G24240 182 / 2e-57 Ribosomal protein L19 family protein (.1) AT4G17560 117 / 3e-32 Ribosomal protein L19 family protein (.1) AT5G47190 116 / 8e-32 Ribosomal protein L19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152200 [exp] 119 / 7e-33 AT4G17560 177 / 1e-55 Ribosomal protein L19 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041948 [exp] 208 / 2e-67 AT4G11630 219 / 4e-72 Ribosomal protein L19 family protein (.1) Lus10017958 [exp] 155 / 7e-46 AT4G11630 155 / 3e-46 Ribosomal protein L19 family protein (.1) Lus10023720 [exp] 115 / 5e-31 AT4G17560 224 / 3e-74 Ribosomal protein L19 family protein (.1) Lus10014467 [exp] 114 / 6e-31 AT4G17560 223 / 9e-74 Ribosomal protein L19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF01245 [poplar] [flax] Ribosomal_L19 Ribosomal protein L19
Representative CDS sequence Show only first row Show all	>Potri.012G086800.1 pacid=42782678 polypeptide=Potri.012G086800.1.p locus=Potri.012G086800 ID=Potri.012G086800.1.v4.1 annot-version=v4.1 ATGCAATCTCTCTACGGCACTTTATTTCGAAGACAAAATCTAAACATCTCTCATTTCAAATCCACTTTAGCTTATTTAGCTGTTACTGAAAGTAAAAATC ATGGATTAACCCTTTTAAACTCAAATTCTTCGGCTCCAAATCGATTCCCTGCGTCAATGACTCAGCCTTTTCGCTCATCTCACTGCTTCTCTCCAAAATT TGGTACTCAAACGGAAACGGCGACGTTCTTGAATGGTAACGGGAGAAGCTGTAGGATGAATTTGTCTTGCTATAGGAGCATGACAACAGTGGGAAATCCG GCTGAAGCGTCTTCAGAAGATTCGTCCGCTCCTGTTGCGGATGTTCCTCCTCGCATCAAATTCAAGAGACTTGATAAAACAGCCAGGCATATAATGCAGA TTTTGAATAAAGAAGCAGTGGAGGAAGTAAGGGGACAGAGGGAGATACCTGATATAAAGCCTGGTTATACTGTGCGACTCAAAGTGGAAGTGCCGGAGAA TAAGCGGCGTGTTTCGACTATTATAGGCACTGTTATAGCTAGACGGAATGCTGGTATACATACTACTTTTAGATTAAGGAGGATGGTTGCTGGTGTTGGA GTTGAATCCTTACTTCCACTGTACTCACCTAACATAAAGCAGATAGAGGTGCTCGATGACAGGAAGAAAGTGAGGAGGGCCAAGCTTTACTATTTAAGAG ACAGGATGAATGCACTTAAGAAACGTTAG
AA sequence Show only first row Show all	>Potri.012G086800.1 pacid=42782678 polypeptide=Potri.012G086800.1.p locus=Potri.012G086800 ID=Potri.012G086800.1.v4.1 annot-version=v4.1 MQSLYGTLFRRQNLNISHFKSTLAYLAVTESKNHGLTLLNSNSSAPNRFPASMTQPFRSSHCFSPKFGTQTETATFLNGNGRSCRMNLSCYRSMTTVGNP AEASSEDSSAPVADVPPRIKFKRLDKTARHIMQILNKEAVEEVRGQREIPDIKPGYTVRLKVEVPENKRRVSTIIGTVIARRNAGIHTTFRLRRMVAGVG VESLLPLYSPNIKQIEVLDDRKKVRRAKLYYLRDRMNALKKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11630			Ribosomal protein L19 family p...		Potri.012G086800 [exp]	0	1
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	1.73	0.9164	Pt-TOM40.1
AT1G18850			unknown protein		Potri.015G064300 [exp]	5.47	0.9073
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	5.47	0.9022
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.006G047600 [exp]	8.00	0.9082	EIF3.4
AT1G16740			Ribosomal protein L20 (.1)		Potri.017G119300 [exp]	9.00	0.9023
AT5G42150			Glutathione S-transferase fami...		Potri.015G038300 [exp]	10.39	0.8812
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.013G106800 [exp]	10.48	0.9099	Pt-RPL15.2
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	11.61	0.8942	TUFA.4
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	12.12	0.8691
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	13.41	0.8785	PHB3.1

Compare expression of checked genes

Potri.012G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.