Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 566 / 0 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G19090 549 / 0 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70530 507 / 3e-172 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G70520 471 / 4e-158 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G28670 374 / 5e-121 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G05200 313 / 3e-97 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G11470 296 / 7e-91 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G21230 293 / 6e-90 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G16670 285 / 1e-89 Protein kinase superfamily protein (.1) AT4G23140 291 / 8e-89 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348000 [exp] 621 / 0 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 492 / 2e-166 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043800 [exp] 474 / 2e-159 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 474 / 3e-159 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 406 / 4e-133 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.017G141400 [exp] 361 / 2e-115 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 355 / 2e-112 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 322 / 1e-100 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.004G025800 [exp] 311 / 3e-96 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029122 [exp] 502 / 3e-170 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 483 / 1e-162 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10030589 [exp] 467 / 2e-156 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 462 / 6e-155 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 452 / 2e-151 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 391 / 1e-130 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010960 [exp] 328 / 2e-103 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10018379 [exp] 303 / 5e-93 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10038940 [exp] 289 / 4e-91 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 296 / 1e-90 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G087000.2 pacid=42783040 polypeptide=Potri.012G087000.2.p locus=Potri.012G087000 ID=Potri.012G087000.2.v4.1 annot-version=v4.1 ATGTCCCCTCTATTCTCCTTCATTTTTCAATACATAATACATCAAAACAGAGGAGAACAGAGACAAACAGAGCAACCCCATTTGAATTCAATGCAATCAT CATTCACATTCTCTCAAAACCTCATAGGGTTGTTTGTAATATTTATTTTAATTCTCTTTCCCTTTTCATCCGCCGATCGCAAGTCCGAAACCAGCCTTAT CTGCGGCTCTTCTAAGCACATTGACAATTCCTACGTACCAAACATTGTGAAAGTCATGGATTCTCTCCAAAAACAGGTCGGTTCTCGGAACTGGGGATGC GGTTTCATCACCTCCCCATTGCTTCAGATATATGGATTAGCCCAATGTCATGATGATCTTTCTAGTCTTGATTGCAAAATCTGTTTTTTCCAAGGCAGAG TCAAACTCCCACGTTGTCTCCCTGCCACTTCTGCTCGAATCTATCTTAATGGTTGTTTTATTCGTTACGATAACTATAACTTCTTTCATGAAGCCATTGA TCCCATGAATGATGCTGTGGTATGTGGTGAGCCAACAAATGCTTTGACAGATAGCTTTTTGCACATGGAGTTCAAGCAACGCTTGGCAGCAGCGATACAG AATGTCACTGCAATGGCACTTGGGAATGGAACATTTGCAGCTGCGGAGGCAAAGGGAAGAGTTTTTTCCGTTTATGCTTTGGCACAATGTTGGAATACGC TTGATAAGGATGAGTGTAGAAAGTGCCTGGCGAAAGCAGGCTCAAAATTAAGTCAATGTGCTCCTGGCTCGGGGGGCAGTGCCTTTTTTGCTGGTTGTTA CATGAAATATTCTACACGGCATTTTTTTAAGAAATCCGTGGAATCAAAAGCTCGTTATGACAACACTGGAATCATAGTTGCAGTTACTTTATCGACAGTT GTGGTCGTCGTGCTAGCTTCTTTTGGTGCTTTTATAGGGTATGAGAGATTGTCAAATAGGAAAGGAGACAAAACCAATCTCCGCCTTTCACCCAACTCTA GTTTAAATTTCACTTATGAGGTGCTTGAGAAGTCAACTGAGTGTTTTGATGACTCGAGGAAATTGGGCCAAGGAGGAGCTGGTTCTGTTTTTAAAGGAAC TCTCCCAGATGGAAGAACGGTTGCAGTTAAGAGATTGGTCTATAGTACAAGGCAATGGGTTGACCAGTTCTTCAATGAAGTTAACTTGATCAGTGGTATT CAACACAAAAACCTTGTCATCCTTTTGGGTTGCAGCATTGAAGGCCCTGAGAGTCTTCTTGTTTATGAATATGTACCTAACAGGAGCCTTGATCAGATTC TTTTCATTAAGAACACATTACATATTCTCAACTGGCAGCAGCGGTTTAATATTATCCTAGGAACAGCCCGAGGACTTGCATATCTACATGGAGGTTGTGG AGTGACTATCATTCATAGAGATATCAAAACTAGCAACATTCTTCTTGACGAGAAGCTTACTCCAAAGATTGCTGATTTTGGACTTGCACGTTGTGTTGCC ACTGACAACACCCATATTAGCACTGGCATTGCAGGAACGTTGGGATATATGGCTCCTGAATATCTTGTTCGAGGGCAGCTAACAGAGAAAGTTGATGTTT ATGGTTTCGGGGTTCTACTTCTTGAGATTGCAACTGGTAAAAAGAACAGTGTATTCTCACAGGGATCAAGTTCAATTCTGCATTCTGTTTGGAAGCATTA CAAAGCTAATACAATTACAGACATGGTTGATCCTGGCTTAAGAGGTATGTTTTCCCAGAAACAGGCAGAAAAGGTGCTTCAAATAGGACTTCTATGCACA CAAGCTTCTTCAAGGCTAAGACCGTCCATGAATGAAGTAGTACAGATGCTCACCGATGCCCAATGTGAAATTCCCTCTCCAAAGCAACCTCCATTCCTGA ATGCTAGCGTTCTTAGTCCAGATGGCGGTGCAGACAGTTGCATCACGGAAGTATCGCTTACATGTAATTCAGTGGTAAATCAGCAAACAACCTCTCATGA AGCACTCTTGGGTGACCCCTCCAAATTCAGACGCTACAGATAG
AA sequence Show only first row Show all	>Potri.012G087000.2 pacid=42783040 polypeptide=Potri.012G087000.2.p locus=Potri.012G087000 ID=Potri.012G087000.2.v4.1 annot-version=v4.1 MSPLFSFIFQYIIHQNRGEQRQTEQPHLNSMQSSFTFSQNLIGLFVIFILILFPFSSADRKSETSLICGSSKHIDNSYVPNIVKVMDSLQKQVGSRNWGC GFITSPLLQIYGLAQCHDDLSSLDCKICFFQGRVKLPRCLPATSARIYLNGCFIRYDNYNFFHEAIDPMNDAVVCGEPTNALTDSFLHMEFKQRLAAAIQ NVTAMALGNGTFAAAEAKGRVFSVYALAQCWNTLDKDECRKCLAKAGSKLSQCAPGSGGSAFFAGCYMKYSTRHFFKKSVESKARYDNTGIIVAVTLSTV VVVVLASFGAFIGYERLSNRKGDKTNLRLSPNSSLNFTYEVLEKSTECFDDSRKLGQGGAGSVFKGTLPDGRTVAVKRLVYSTRQWVDQFFNEVNLISGI QHKNLVILLGCSIEGPESLLVYEYVPNRSLDQILFIKNTLHILNWQQRFNIILGTARGLAYLHGGCGVTIIHRDIKTSNILLDEKLTPKIADFGLARCVA TDNTHISTGIAGTLGYMAPEYLVRGQLTEKVDVYGFGVLLLEIATGKKNSVFSQGSSSILHSVWKHYKANTITDMVDPGLRGMFSQKQAEKVLQIGLLCT QASSRLRPSMNEVVQMLTDAQCEIPSPKQPPFLNASVLSPDGGADSCITEVSLTCNSVVNQQTTSHEALLGDPSKFRRYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.012G087000 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.013G061100 [exp]	1.73	0.8766
					Potri.010G181700 [exp]	2.23	0.9017
AT5G38260			Protein kinase superfamily pro...		Potri.007G125200 [exp]	4.24	0.8930
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	6.63	0.8292
					Potri.018G104801 [exp]	8.83	0.8599
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	9.00	0.8506
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.011G043800 [exp]	10.19	0.8077
					Potri.001G194901 [exp]	10.39	0.8478
AT3G19540			Protein of unknown function (D...		Potri.009G092400 [exp]	11.66	0.7987
					Potri.017G145400 [exp]	14.00	0.8655

Compare expression of checked genes

Potri.012G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.