Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23380 323 / 9e-110 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 310 / 8e-105 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT4G08150 258 / 3e-83 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 238 / 7e-76 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT5G11060 128 / 1e-33 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT1G62990 124 / 4e-33 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 126 / 7e-33 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 122 / 1e-31 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT4G34610 66 / 1e-11 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G27220 65 / 2e-11 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079100 [exp] 552 / 0 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 352 / 1e-121 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 351 / 3e-121 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 267 / 6e-88 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 265 / 5e-87 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 261 / 6e-85 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.011G011101 [exp] 238 / 9e-76 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 237 / 1e-75 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 232 / 2e-73 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029125 [exp] 352 / 3e-121 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 349 / 6e-120 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 244 / 2e-78 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 226 / 7e-71 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 213 / 6e-67 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10007245 [exp] 160 / 3e-48 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10042102 [exp] 136 / 3e-39 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10042103 [exp] 129 / 2e-36 AT1G70510 125 / 1e-35 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) Lus10006291 [exp] 121 / 6e-31 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 119 / 2e-30 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03789 [poplar] [flax] ELK ELK domain PF03790 [poplar] [flax] KNOX1 KNOX1 domain PF03791 [poplar] [flax] KNOX2 KNOX2 domain CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain
Representative CDS sequence Show only first row Show all	>Potri.012G087100.1 pacid=42783189 polypeptide=Potri.012G087100.1.p locus=Potri.012G087100 ID=Potri.012G087100.1.v4.1 annot-version=v4.1 ATGATGGAAGAACTTTACGGTCTTCAATCCACCAGCTCTGATTACTCTTTGCAGGTTCCATCAGAGAACATGGTTTCTCCAGTGGCTAATTACTACCATC CTGTGGGGTTCACCTCCCCAGCTGGGGAGCCATCATTTCCTGTTTTTGGATCGGAGCAGATGTTTTGTGGTTCCTCAGTATCTGATGCTGCTTCAATGGG GGCCGAGTTGCATCAGAAGCAGCAGCAGCAGAGTGGGGGTGTTGGTGTTGGTGATCATAGTAATAGAAATAATTCAGAGGAGGTTTCTTGTGCAATTAGG GCTAAAATTGCTTCTCACCCGCTTTACCCTAAGTTACTTGAAGCTTATATTGATTGCCAGAAGGTGGGAGCACCGCCGGAGATGGCTTATTTATTAGATG AAATCCGGCTAGTGAATGATGTTTCCAAGGGGTCCAATGATACTGTCGCCTCTTGCTTGGGTGCCGATCCCGAGCTCGACGAGTTCATGGAAACTTACTG TGACGTTCTGATGAAGTATAAAGCGGATCTCTCAAGGCCTTTCGATGAAGCCACTACTTTCTTGAATGATATAGAAGCTCAGTTTAATACTCTCTGCAAC GGTCCTTCCAGAAGCCAAGTTTATGATGAAGCTGCTGGTTCATCTGATGAAGATGCCAGTGGAGGAGAGGCAGGCATGCAAGATTCAACCCGTATAAACG AGGATCGAGAGCTGAAGGACAAACTATTACGTAAATATAGTGGTTACATAAGTACCCTAAAGCATGCGTTTTCAAAACAGAAGAAGAAAGGAAAACTACC AAAGGAAGCAAGGCAAATCCTGTTAAACTGGTGGAACATTCATAACAAATGGCCATACCCAACGGAAGCTGATAAGGTTGCTTTGGCCGAATCAACTGGC CTAGATCAGAAACAGATAAACAACTGGTTCATCAATCAAAGGAAACGTCACTGGAAACCATCAGAGAACATGCAATTTGCTGTTGTGGATAGTCTGTATG GTCCCTTTTTCATGAACGACTGA
AA sequence Show only first row Show all	>Potri.012G087100.1 pacid=42783189 polypeptide=Potri.012G087100.1.p locus=Potri.012G087100 ID=Potri.012G087100.1.v4.1 annot-version=v4.1 MMEELYGLQSTSSDYSLQVPSENMVSPVANYYHPVGFTSPAGEPSFPVFGSEQMFCGSSVSDAASMGAELHQKQQQQSGGVGVGDHSNRNNSEEVSCAIR AKIASHPLYPKLLEAYIDCQKVGAPPEMAYLLDEIRLVNDVSKGSNDTVASCLGADPELDEFMETYCDVLMKYKADLSRPFDEATTFLNDIEAQFNTLCN GPSRSQVYDEAAGSSDEDASGGEAGMQDSTRINEDRELKDKLLRKYSGYISTLKHAFSKQKKKGKLPKEARQILLNWWNIHNKWPYPTEADKVALAESTG LDQKQINNWFINQRKRHWKPSENMQFAVVDSLYGPFFMND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	0	1
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	3.16	0.7481	Pt-HB1.7
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067900 [exp]	4.69	0.7628
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.001G161500 [exp]	6.63	0.7320
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.005G053900 [exp]	7.93	0.7178
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	8.00	0.7079	PIN7,Pt-PIN1.2
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	8.48	0.6821
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Potri.002G113300 [exp]	8.94	0.7041	KNAT1.1
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	11.87	0.7367
AT5G24320			Transducin/WD40 repeat-like su...		Potri.015G009700 [exp]	12.48	0.6324
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	14.07	0.7034

Compare expression of checked genes

Potri.012G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.