Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63010 275 / 9e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 61 / 9e-11 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 50 / 4e-07 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 49 / 8e-07 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 47 / 4e-06 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G16780 46 / 9e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G80710 45 / 2e-05 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G43920 40 / 0.0008 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000900 [exp] 363 / 2e-127 AT5G63010 425 / 1e-149 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 58 / 1e-09 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 57 / 1e-09 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 57 / 2e-09 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G002700 [exp] 57 / 3e-09 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 56 / 3e-09 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.011G066600 [exp] 53 / 2e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 50 / 4e-07 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.014G179700 [exp] 48 / 2e-06 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027338 [exp] 308 / 1e-105 AT5G63010 432 / 2e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039042 [exp] 226 / 2e-73 AT5G63010 377 / 7e-131 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 61 / 9e-11 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 61 / 9e-11 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 60 / 3e-10 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 59 / 7e-10 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 50 / 6e-07 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 49 / 2e-06 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 49 / 2e-06 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 48 / 2e-06 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G087300.1 pacid=42783472 polypeptide=Potri.012G087300.1.p locus=Potri.012G087300 ID=Potri.012G087300.1.v4.1 annot-version=v4.1 ATGTGTCTTTGTTTGGACTGGAACCCATCAGCCACATCAATCTCAGTGGGGCTTTCTGATAGTTCTGTATCTATAGTCTCCTTTTCGGAGTCCCAGTTAG ATGTAATTCAAGAGTGGGAAGCACATGAATTTGAGCTATGGGCTGCTTCATTTGACTTTCACCAACCTCAGTTGGTATACACTGGTTCGGATGATTGCAA ATTCAGTTGTTGGGATTTAAGGGATGATCCTTCCAATTTGGTATTTCAGAATTATAAAATCCATAAGATGGATATCTGTTACATTGCAAAGAATCCCAGT GACCCTAATATCTTACTCACTCGTAGTTATGACGAGTATCTAAGGCTATGGGATGTAAGATCAATTTCAAAACCAGTTAATGAAACATTATTTTGTTTAG GGAGCGGAGTTTGGAGAGTCAAACACCACCCATATGTACCAGGCGTGGTCTTAGCAGCTTGCATGCACAATGGCTTTGCAGTTGTGAAGATTGATGAGGA GAAAGGTGAACTGATGGAAATCCATGCCAAGAATGGCTCACTTGCCTACGGTGCAGATTGGCAAGGGGGGGAATTATATCAGAAGGTCAAACAAAACAGC TCTGTAGTGGCTACTTGTTCCTTTTATGATCTGCTTCTTCAGATATGGATACCAGAAAGCTGTATTTTTAAGCGACTTTGA
AA sequence Show only first row Show all	>Potri.012G087300.1 pacid=42783472 polypeptide=Potri.012G087300.1.p locus=Potri.012G087300 ID=Potri.012G087300.1.v4.1 annot-version=v4.1 MCLCLDWNPSATSISVGLSDSSVSIVSFSESQLDVIQEWEAHEFELWAASFDFHQPQLVYTGSDDCKFSCWDLRDDPSNLVFQNYKIHKMDICYIAKNPS DPNILLTRSYDEYLRLWDVRSISKPVNETLFCLGSGVWRVKHHPYVPGVVLAACMHNGFAVVKIDEEKGELMEIHAKNGSLAYGADWQGGELYQKVKQNS SVVATCSFYDLLLQIWIPESCIFKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63010			Transducin/WD40 repeat-like su...		Potri.012G087300 [exp]	0	1
AT4G22160			unknown protein		Potri.006G270200 [exp]	9.05	0.6930
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	10.95	0.6601	HAT22.2
AT4G22160			unknown protein		Potri.011G011400 [exp]	20.42	0.6716
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.005G181300 [exp]	153.70	0.5750
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	162.27	0.5725
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	269.56	0.5416

Compare expression of checked genes

Potri.012G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.