Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 1075 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079000 [exp] 1631 / 0 AT3G48200 1134 / 0.0 unknown protein Potri.001G330000 [exp] 481 / 2e-151 AT3G48200 492 / 3e-155 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039976 [exp] 1109 / 0 AT3G48200 1074 / 0.0 unknown protein Lus10008827 [exp] 985 / 0 AT3G48200 925 / 0.0 unknown protein Lus10002461 [exp] 412 / 4e-134 AT3G48200 425 / 1e-139 unknown protein Lus10035212 [exp] 417 / 3e-127 AT3G48200 476 / 3e-149 unknown protein Lus10032047 [exp] 382 / 1e-114 AT3G48200 457 / 2e-142 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G087400.1 pacid=42783327 polypeptide=Potri.012G087400.1.p locus=Potri.012G087400 ID=Potri.012G087400.1.v4.1 annot-version=v4.1 ATGGGTCGGCCCAAACTTTCATGGCTGGTTCTGCTTTGTTGGGCACTTTTATTTCTGTGCTTTAGAGCTCTCTGTGAAGATGCAGAGGTATTTGTGAAGT TCTTGAAGGCACCTCATGCATTCTCACACTTGAACATAGCCACATTTGAGTTTCAAGTTTTAGTGGGTGGGGATGTGAACTCCTGCACAAACTGTAGCTT CAGTTGCAAGCTAGATAGCGGCTCTGAATCTGATTGCGGAGCTACTAAGGTTTCATACCAGGGTTTGCAGGATGGAAACCATACATTTGAGGTCTGCATC AATGGGTCTCAAGGAGTTGGCTGTGCTACGTATAACTGGACTGTTGATACCATACCCCCAACAGCGTATATAACTGCATCAAAATCATTTACAAATGCTC TTAATGTCTCTGTAAATATTTCTTTCACTGAACCCTGTACTGGAGGAGGAGGTTTTGGATGTTCATCTGTGAATGCGTGCAATCTGATAGTCTATGGTGC TGGCCAAGTAATACCATCCTCTCTCACTGTTCTGGAACCAAATCTGAAATATACTCTTCTGGTGGGTTTATATCCTAATGTTTTTTATGGACGTGTGGTA CTGGTAATGGATAAGAACTTCTGTACTGACGCTGCTGGAAACAGATTTACAAGAGCTGCCAATTCAAGTTTCTTTGTGCATCTTGATAGAAGAAGGGTGT TTGTTGACCTGAGGATCCACATTCCAGAGAAGCTACTTCAACTTAATAATGAAATCAGAACAGTCAAGGCAACCAATAATTATGATAACTTGAAGTTTTA CTTGTACTTCTCAGAACCTATTTTGAATTCATCTGCCGAAATTCTAAATTCTCTCAACACAAGTGAGGGAGTGCTTCTTCCTATAAGTGGAGAAAACCTT ATGAACCGAAAATTTGGCTTTCAGGTTGCAAATTTATCCAGCATTGCAATCATTACAATCAGCCTTCTTTCAATTTCTATTATAAGCAGGCCAGGGACCT CAGTTTCTCCAATTGCCCCATCTACTTTTCTTTATGATTCTCAAAGACCTGTTGTGAGACTGAGTACATTGTCTAATACAAGGACAGGGGAACATAGCAT TCCAATATCAATTAAGTTCATGAAGCCAGTATTTGGCTTCAACTCCTCTTTTCTATCTATCGGAGGGGGTCATTTGCAGGGCTTTCATGAAATAAGTAGG AGCAAATACATTGCAGAGGTAAAAGCAGATGATGATGTTGTTTCTGTCAGTGTTCCTCAAAATGTAACTGGGGATGTTGCTGGAAATAAAAATCTAGGAT CTAATATTTTACAAGTGAGACGACATTCTGTGCCAATGATATCATCTGTAATCTCTGCTTTTGCAACTGCTTGTTTCCTTGCTACTTCTCTTGCCGCTGG GCTACTCACTCTGTCAACTGCTAGCCTTCTCTCTGCTGGGGCATTTTCAAGACCGTCTCCTTTACTGACAGCTGAACCTACAAGGAATCTTTTTAGAAGT GCATGCCATATTCAGGTTTTTGCGCTGTCAAGATGGTTGGCTGTTACGCTGCCAATCGAATATTATGAGTTTGCAAAAGGTTTACAATGGAGCATTCCCT ACTTCATTCTCCCATGGGAAACTGGGGGTATTCATCCAATCATGGTGAAATCAAATTCGTTTTCCATATTAAATTCCTACATCTCAAAAACTCATGATAT ATCCCAGAACATGCAACTGGAAGGGAAGAGTGGGAATAAGTCTTCTCCGGTGTTTGGATTGCCCCTTGCTCCAATGGAGTACATATCATTTTTTGAGAGT CAAAATTTTAAACCAGAAGCAGAACATATTATAGATCCACAACATTCGAATGGATGGAGGGATTTTGATAGAAGCATGTTCTGGTTAGCTGTAATTGGTG TCAGTTTGGTACTGCTCCATGTCATACTCTTATTTATTATAAAATTAAGGAAAAGAACTGCTGATAAGCAGAGGGACTATGGAGCACTGACCTTCCCAAG ATTTGAGATATTTCTCACTGTTCTTGCTTTACCTTGTATTTGCAAGGCCTCAGCTTCTCTAGTTAGAGGAGGGACAGCATCAGGGATTATAGTTGGCATT TTGCTGCTGGGTGTGGTGGGATTCTTACTGCTGGCCTTGCTCCTGATTCTTTCTATTGGAATCACTTTTGGAAAGCTACTTCAGTACAAGGAAATCCATC AAGAAGGTCAGATATTTCACTGGTATCGAGATATTACCCGAGTAACTTTAGGTCCTGGTAAGAGAGGCCAGTGGACATGGAAGAATAAATCAAACTCTGT ATATCTAATCAGGTTAGGTCCTTTATTTGAAGATCTAAGAGGCCCCCCTAAATACATGCTCTCACAAATTGCTGGGGTTCCCCGCAAGCAAGGGGATCAT ATCATTGCCTCTGATGATGAAACAGAAGATGCAGAAGCACCATTTATACAGAAGCTGTTTGGAATTCTTAGAATATACTACACACTGCTTGAGTCAGTCA AGAGAGTTTCTTTGGGCATTGTGGCTGGTGCCTACCTGGATAACTGGTCCTCTAAAACTCCAACAGTCGTCTTATTGTCCATCACTTTCTTTCAGCTCTT CTTCCTTGTCCTTAAGAAGCCTTTTATTAAGAAAAAGGTCCAACTGGTTGAGATAATCTCTATTACCAGCCAAGTTAGTATTTTTGCTACTTGTTTCATT CTCTTGGAGAAGAAATTATCGACTAGAGAAGAAACCAGAGTTGGAATCTTCATGATTTTACTTTTCTTAATTGGATTCTTGGCACAAATGGTCAATGAAT GGTACGCATTGTATAGACAGATAAAGTGGCTGGATCCCTCTGAGCAGTATTTCTTAACAGGTCTGAAAACTGCATCAATTGGATTTCTCTTGTTTTTCAT TCCGAGAAGATTGAGCCAAAACCTGGAAAGCAAACTACCAGCTAGACAGCATGGTGATAGAGAAACTGGGGGAGAGACTGGTTCTTCTGTTGACAGAAAC AAAATCTCAGGGAGCAAGGGCTCTGGCAAGCCAGATAAACCATGGCAGAAACAACTAAGAGAATTAGCACGGGCCAGCTTCAGCAAAGAAAGAAGTGGAT CACAGAATGATCCTTCAACCAGTCGAACTAAATGGAGTGGATTTTGGACAAACAAATGGAGTGGGAGCTCATCTCAAAAGACCTCTTCAGATTTAAAGTC CAAACCGAATCAGTTGTACAAAGATTTAGAAGACATTTTTGCATCAAAATGA
AA sequence Show only first row Show all	>Potri.012G087400.1 pacid=42783327 polypeptide=Potri.012G087400.1.p locus=Potri.012G087400 ID=Potri.012G087400.1.v4.1 annot-version=v4.1 MGRPKLSWLVLLCWALLFLCFRALCEDAEVFVKFLKAPHAFSHLNIATFEFQVLVGGDVNSCTNCSFSCKLDSGSESDCGATKVSYQGLQDGNHTFEVCI NGSQGVGCATYNWTVDTIPPTAYITASKSFTNALNVSVNISFTEPCTGGGGFGCSSVNACNLIVYGAGQVIPSSLTVLEPNLKYTLLVGLYPNVFYGRVV LVMDKNFCTDAAGNRFTRAANSSFFVHLDRRRVFVDLRIHIPEKLLQLNNEIRTVKATNNYDNLKFYLYFSEPILNSSAEILNSLNTSEGVLLPISGENL MNRKFGFQVANLSSIAIITISLLSISIISRPGTSVSPIAPSTFLYDSQRPVVRLSTLSNTRTGEHSIPISIKFMKPVFGFNSSFLSIGGGHLQGFHEISR SKYIAEVKADDDVVSVSVPQNVTGDVAGNKNLGSNILQVRRHSVPMISSVISAFATACFLATSLAAGLLTLSTASLLSAGAFSRPSPLLTAEPTRNLFRS ACHIQVFALSRWLAVTLPIEYYEFAKGLQWSIPYFILPWETGGIHPIMVKSNSFSILNSYISKTHDISQNMQLEGKSGNKSSPVFGLPLAPMEYISFFES QNFKPEAEHIIDPQHSNGWRDFDRSMFWLAVIGVSLVLLHVILLFIIKLRKRTADKQRDYGALTFPRFEIFLTVLALPCICKASASLVRGGTASGIIVGI LLLGVVGFLLLALLLILSIGITFGKLLQYKEIHQEGQIFHWYRDITRVTLGPGKRGQWTWKNKSNSVYLIRLGPLFEDLRGPPKYMLSQIAGVPRKQGDH IIASDDETEDAEAPFIQKLFGILRIYYTLLESVKRVSLGIVAGAYLDNWSSKTPTVVLLSITFFQLFFLVLKKPFIKKKVQLVEIISITSQVSIFATCFI LLEKKLSTREETRVGIFMILLFLIGFLAQMVNEWYALYRQIKWLDPSEQYFLTGLKTASIGFLLFFIPRRLSQNLESKLPARQHGDRETGGETGSSVDRN KISGSKGSGKPDKPWQKQLRELARASFSKERSGSQNDPSTSRTKWSGFWTNKWSGSSSQKTSSDLKSKPNQLYKDLEDIFASK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48200			unknown protein		Potri.012G087400 [exp]	0	1
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	2.44	0.8796
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	2.64	0.8842
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Potri.017G116400 [exp]	2.82	0.8741
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	4.00	0.8800
AT4G13950		RALFL31	ralf-like 31 (.1)		Potri.017G059500 [exp]	4.89	0.8631
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	9.74	0.8701
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	13.67	0.8643
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	20.39	0.8493
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	21.90	0.8696
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	24.24	0.8079

Compare expression of checked genes

Potri.012G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.