Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50130 425 / 1e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 324 / 4e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 305 / 1e-102 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 268 / 2e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 242 / 4e-78 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 241 / 1e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 235 / 2e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 234 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 104 / 5e-25 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 100 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081102 [exp] 573 / 0 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 573 / 0 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G086900 [exp] 319 / 4e-108 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 290 / 1e-96 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 270 / 3e-89 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 265 / 3e-87 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 251 / 6e-82 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 248 / 8e-81 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 241 / 1e-77 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042088 [exp] 416 / 1e-145 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018092 [exp] 347 / 2e-118 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003204 [exp] 320 / 3e-108 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017308 [exp] 295 / 8e-99 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 281 / 2e-93 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024415 [exp] 268 / 4e-88 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 255 / 3e-83 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 256 / 6e-83 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 251 / 1e-81 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 248 / 1e-80 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.012G087800.4 pacid=42783397 polypeptide=Potri.012G087800.4.p locus=Potri.012G087800 ID=Potri.012G087800.4.v4.1 annot-version=v4.1 ATGAAGGAAACATTGCGATACCTTGCAGGCATTGCAGGCCCGAGTGGTTATGGCTCAAATTCAACTGCCGAGCAAGTTATTCAAGATTATGCTTGCTCGG GCCCTCCCCATTTAACTGCCATCATCACTGGGGCTACGTCAGGTATTGGAGTTGAAACTGCAAGAGCACTAGCTAAGAAAGGTTTGAGAATAGTGATTCC TGCAAGAGACCTGAAAAAAGCTGATGAACTGAAGGAAGTGATACGAGAAGAGAGTCCAAAGGCAGAGATAGTTATATTTGAGACTGATATAAGCTCATTT GTTTCTGTAAGGAGATTTTGTTCTGGTTTTCTCGCTCTGGGACTACCCCTTAACATCCTCATAAATAATGCTGGCATATACTCTCAGAAATTGGAGTTCT CCGAAGACAAAATTGAGATGACATTCGCTACAAATTACTTGGGACATTTTTTGTTGACAGAGTTGCTATTAGAGAAAATGATAGAAACAGCAGAGCAGAC AGGCATCCAAGGAAGAATAATAAATCTTTCCTCTGCAATTCACAGCTGGGTGAGGAGAGATGCTTTTTGTTTCAGCAAAATGCTTTACCCAGGGAATTAT GATGGTACAAGTGCATATTCTCAATCAAAATTGGCTAATATATTGCATGTCAAGGAAATTGCCACAAAGCTCAAGGCAAGGAATGCAAGAGTGACAATGA ATGCAGTACACCCAGGCATTGTAAAGACTGGAATAATGAGAGATAGTTATAAGGGCTTTATCACAGCAGATTCCCTTTACTTGATTGCGTCCAAGTTACT AAAATCTACATCTCAGGGTGCATCAACCACATGTTATGTTGCTTTGAGTCCACAAACAGAAGGTGTGAGTGGAAAATATTTTGCAGACTGTAATGAAATT AACTGCTCAGCTCTAGCAAATGACGGATTAGAGGCACGGAAACTTTGGATGCAGACCCATGCACTGCTGCAAAGATATCTGTATCCGCCACCAACACAGC ATGTTCTTCTATGTGACTGA
AA sequence Show only first row Show all	>Potri.012G087800.4 pacid=42783397 polypeptide=Potri.012G087800.4.p locus=Potri.012G087800 ID=Potri.012G087800.4.v4.1 annot-version=v4.1 MKETLRYLAGIAGPSGYGSNSTAEQVIQDYACSGPPHLTAIITGATSGIGVETARALAKKGLRIVIPARDLKKADELKEVIREESPKAEIVIFETDISSF VSVRRFCSGFLALGLPLNILINNAGIYSQKLEFSEDKIEMTFATNYLGHFLLTELLLEKMIETAEQTGIQGRIINLSSAIHSWVRRDAFCFSKMLYPGNY DGTSAYSQSKLANILHVKEIATKLKARNARVTMNAVHPGIVKTGIMRDSYKGFITADSLYLIASKLLKSTSQGASTTCYVALSPQTEGVSGKYFADCNEI NCSALANDGLEARKLWMQTHALLQRYLYPPPTQHVLLCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	6.00	0.7841	GLP10.2
AT1G61260			Protein of unknown function (D...		Potri.001G406600 [exp]	11.66	0.6826
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.001G126901 [exp]	12.64	0.7275
AT5G05390		LAC12	laccase 12 (.1)		Potri.010G183500 [exp]	14.69	0.7223
AT1G22460			O-fucosyltransferase family pr...		Potri.002G100400 [exp]	14.83	0.7006
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069300 [exp]	15.23	0.7297
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.014G049800 [exp]	16.97	0.7420
					Potri.001G443025 [exp]	26.32	0.7292
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	31.84	0.7391
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G105900 [exp]	35.55	0.7088

Compare expression of checked genes

Potri.012G087800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.