Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 1005 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 975 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 852 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 849 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 733 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 593 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 592 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 576 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 516 / 1e-165 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 515 / 1e-165 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080800 [exp] 1719 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 1035 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 1028 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G175700 [exp] 835 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 833 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 830 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 803 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 717 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 712 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032954 [exp] 993 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011756 [exp] 848 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 830 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028612 [exp] 808 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 804 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10017782 [exp] 715 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 712 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042090 [exp] 528 / 2e-178 AT5G56040 378 / 2e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 513 / 3e-164 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 511 / 6e-164 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G088100.1 pacid=42783588 polypeptide=Potri.012G088100.1.p locus=Potri.012G088100 ID=Potri.012G088100.1.v4.1 annot-version=v4.1 ATGCCTGTAAATCCATGGCCCCTCTTTTCCTTCTTATTCTTCTCTTCTACCCTTGTGCTTCTCTTTCCTTTTACTGCTTTCGCCGTCAACCAACAAGGCG AAACTCTTCTTTCATGGAAGAGAAGCTTGAATGGATCACCTGAGGGGTTGAATAATTGGGACTCGAGCAATGAGACTCCCTGTGGATGGTTCGGAATTAC TTGCAACTTTAACAATGAAGTTGTGGCATTGGGTTTGAGGTATGTCAATTTATTTGGAACACTTCCCTCCAATTTTACTTTTTTGTCTTCCTTAAACAAG CTTGTTCTGTCTGGAACCAATCTTACTGGCACAATCCCAAAAGAGATTGGCACTGCTCTTCCTCAATTGACTCACTTAGACTTGAGTGAGAATGCCTTGA CCGGCGAGATTCCAAGTGAGCTTTGTAACTTTCCCAAGCTTGAACAACTCCTTCTCAACTCAAATCAACTTGAGGGCTCCATTCCAATCGAGATCGGAAA CCTCACTAGCTTGAAATGGCTAATCCTCTACGACAATCAACTTAGCGGTTCCATTCCCAACACCGTAGGCAAGTTGAAGTATCTTGAAGTGATTAGAGCT GGTGGCAACAAGAACCTTGAAGGTTCATTGCCTAAAGAAATTGGCAACTGCAGCAATTTGTTGATGTTAGGCCTAGCAGAAACAAGCATCTCAGGTTTTC TCCCACCGAGCCTCGGCCTCCTGAAAAAACTCCAAACCGTTGCCATCTACACCACCCTCCTTTCCGGCCAAATCCCTCCAGAACTCGGTGACTGCACCGA GCTCCAAGACATATACCTTTATGAAAACTCACTCACTGGCTCAATTCCGAAAACATTAGGCAAGCTCCGAAACCTTAGAAACCTTTTGCTCTGGCAGAAC AACTTGGTTGGTATTATCCCTCCCGAGCTCGGAAACTGCAACCAAATGTTGGTGATTGACATATCAATGAATTCCTTAACCGGAAGCATTCCGCAATCAT TCGGCAATCTAACTGAACTCCAAGAACTCCAGCTTAGCCTCAATCAAATCTCCGGAGAAATCCCAGCACAGCTTGGAAACTGCCAGAAGATCATTCACAT CGAACTCGACAACAATCAAATCACTGGCTCAATCCCACCTGAAATAGGTAACTTATTTAATCTCACACTCTTTTACTTATGGCAGAACAAACTCGAAGGC AACATACCGCCTTCCATTTCCAACTGTCAAAACTTAGAAGCCATAGATTTATCTCAAAATGGCTTAGTGGGGCCTATTCCAAAAGGAGTTTTTCAACTGA AGAAACTCAACAAACTCTTGCTTCTTTCCAACAATCTCTCCGGTGAAATACCGCCCGAGATTGGAAACTGCTCGTCTTTGATTCGTTTTCGAGCTAATAA CAACAAGGTTTCCGGAACTATTCCGGCCCACATTGGAAATTTGAAGAACCTGAACTTCTTGGATCTCGGATCGAACCGGATTACCGGAGTAATCCCGGAA GAAATATCGGGTTGTCAAAATCTCACATTTTTGGATTTGCATTCAAATGCTATTTCTGGTAACTTGCCACAGAGTTTTGACAAGCTCATATCACTCCAGT TTATTGATTTCTCCAATAACTTGATTGAAGGCACACTGAGTCCAAGTCTTGGTTCACTGAGTTCACTCACCAAACTCACTCTTGCTAAGAACAGGCTGTC AGGTTCCATTCCGAGTCAACTCGGTTCCTGCTCCAAGTTACAGTTATTGGACCTGAGTGGAAATCAGTTATCAGGGAACATTCCGTCAAGTGTTGGAAAG ATCCCGTCACTGGAAATCGCTTTGAATCTAAGCTTGAATCAACTTAATGGGGAGATTCCGTCAGAGTTCACGGGGTTAAACAAGCTTGGCATTTTGGATA TTTCGTATAATCATCTTACAGGCGATCTTCAACATCTCGCAGCTTTGCAGAATCTTGTCGTGCTTAATGTCTCGCACAATAATTTCTCGGGGCACGTGCC TGACACGCCCTTCTTCTCGAAGCTTCCTCTCAGTGTACTTGCCGGGAATCCTGCTCTTTGCTTCTCCGGTAACCAGTGCGATTCTGGTGACAAGCACGTT CAGCGAGGGACGGCAGCGCGTGTGGCAATGATTGTGCTGTTGTGTGCCGCATGTGCGCTCCTTTTGGCAGCGCTCTACATTATCCTAGCAAGCAAAAAAC GTGGCAGTGGGGCCCAGGAGTGTGAAGGTGAGGATGACGTGGAGATGAGTCCGCCTTGGGAAGTGACTTTATATCAGAAACTAGACTTGTCAATTGCTGA TGTGACACGATCGTTGACAGCTGGCAATGTGGTAGGACGAGGCCGGTCCGGTGTGGTTTACAAGGTTACCATTCCGTCTGGATTAATGGTAGCTGTTAAG AGATTCAAGTCGGCAGAGAAGATTTCAGCTGCAGCATTTTCATCCGAGATTGCTACATTGGCGAGAATTCGGCACCGAAACATTGTCCGTTTACTCGGGT GGGGAGCAAACCGGAAAACAAAGTTGCTGTTTTATGATTACATGGCTAATGGCACATTAGGGACATTGTTACATGAAGGGAATAATTTTGGATTGGTGGA GTGGGAGACGAGGTTTAAGATCGCATTAGGGGTGGCAGAGGGGCTAGCGTATTTGCACCACGATTGCGTACCGCCGATTCTGCACCGAGATGTGAAAGCG CATAATATCTTGCTTGGGGACCGGTTTGAGGCATATTTAGCCGATTTCGGGCTGGCTAGGCTGGTTGAAGACGAGCATGGATCATTCTCTGCAAACCCAC AATTTGCAGGGTCCTATGGATACATTGCACCAGAGTACGCTTGCATGCTTAAAATCACTGAAAAGAGTGATGTATATAGCTATGGAGTGGTCCTTTTAGA GACAATAACTGGAAAAAAGCCAGTCGATCCATCATTCCCGGATGGCCAACATGTTGTCCAATGGGTCAGAAACCACCTGAGGAGCAAGAAGGACCCAGTT GAAATACTTGATCCTAAACTGCAAGGCCACCCAGACACACAAATACAGGAAATGCTTCAAGCTCTTGGAATCTCTCTTCTTTGCACAAGCAATCGCGCTG AAGATCGCCCGACAATGAAAGATGTGGCAGTATTATTGAAGGAAATTCGACAGGAACTGATCACAGGCGGTGAGGCCCAGAAGCCGACCAACAAATCATC GAAAACGATGGAAAGCAATCCATCATATTCATCATCCTCGGTGACCCCAGCTCAATTGTTGATGCTTCAACAAGGGTCTTCTCGTTGCTCACTTGCTTAC TCATCTTCATCATCAACTAGTATTATGTCAAGTGCTAATCAATAA
AA sequence Show only first row Show all	>Potri.012G088100.1 pacid=42783588 polypeptide=Potri.012G088100.1.p locus=Potri.012G088100 ID=Potri.012G088100.1.v4.1 annot-version=v4.1 MPVNPWPLFSFLFFSSTLVLLFPFTAFAVNQQGETLLSWKRSLNGSPEGLNNWDSSNETPCGWFGITCNFNNEVVALGLRYVNLFGTLPSNFTFLSSLNK LVLSGTNLTGTIPKEIGTALPQLTHLDLSENALTGEIPSELCNFPKLEQLLLNSNQLEGSIPIEIGNLTSLKWLILYDNQLSGSIPNTVGKLKYLEVIRA GGNKNLEGSLPKEIGNCSNLLMLGLAETSISGFLPPSLGLLKKLQTVAIYTTLLSGQIPPELGDCTELQDIYLYENSLTGSIPKTLGKLRNLRNLLLWQN NLVGIIPPELGNCNQMLVIDISMNSLTGSIPQSFGNLTELQELQLSLNQISGEIPAQLGNCQKIIHIELDNNQITGSIPPEIGNLFNLTLFYLWQNKLEG NIPPSISNCQNLEAIDLSQNGLVGPIPKGVFQLKKLNKLLLLSNNLSGEIPPEIGNCSSLIRFRANNNKVSGTIPAHIGNLKNLNFLDLGSNRITGVIPE EISGCQNLTFLDLHSNAISGNLPQSFDKLISLQFIDFSNNLIEGTLSPSLGSLSSLTKLTLAKNRLSGSIPSQLGSCSKLQLLDLSGNQLSGNIPSSVGK IPSLEIALNLSLNQLNGEIPSEFTGLNKLGILDISYNHLTGDLQHLAALQNLVVLNVSHNNFSGHVPDTPFFSKLPLSVLAGNPALCFSGNQCDSGDKHV QRGTAARVAMIVLLCAACALLLAALYIILASKKRGSGAQECEGEDDVEMSPPWEVTLYQKLDLSIADVTRSLTAGNVVGRGRSGVVYKVTIPSGLMVAVK RFKSAEKISAAAFSSEIATLARIRHRNIVRLLGWGANRKTKLLFYDYMANGTLGTLLHEGNNFGLVEWETRFKIALGVAEGLAYLHHDCVPPILHRDVKA HNILLGDRFEAYLADFGLARLVEDEHGSFSANPQFAGSYGYIAPEYACMLKITEKSDVYSYGVVLLETITGKKPVDPSFPDGQHVVQWVRNHLRSKKDPV EILDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAVLLKEIRQELITGGEAQKPTNKSSKTMESNPSYSSSSVTPAQLLMLQQGSSRCSLAY SSSSSTSIMSSANQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56040			Leucine-rich receptor-like pro...		Potri.012G088100 [exp]	0	1
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	2.44	0.8918
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.005G145300 [exp]	2.82	0.8913
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	6.92	0.8863
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	9.38	0.8547
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	10.39	0.8730
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	15.23	0.8783
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	15.49	0.8766
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	16.09	0.8642
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	18.65	0.8442
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	19.33	0.8171

Compare expression of checked genes

Potri.012G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.