Plant FIBer expression Database

Potri.012G088400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1)
AT1G78450 111 / 5e-30 SOUL heme-binding family protein (.1)
AT1G78460 93 / 4e-23 SOUL heme-binding family protein (.1)
AT3G10130 40 / 0.0008 SOUL heme-binding family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G080000
[exp]
372 / 7e-133 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
Potri.010G044200
[exp]
174 / 2e-54 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1)
Potri.001G379000
[exp]
144 / 6e-43 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1)
Potri.001G067100
[exp]
110 / 1e-29 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1)
Potri.016G109400
[exp]
61 / 4e-11 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1)
Potri.016G098500
[exp]
55 / 7e-09 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001247
[exp]
289 / 8e-100 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1)
Lus10042093
[exp]
288 / 1e-99 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1)
Lus10013045
[exp]
147 / 7e-44 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1)
Lus10012559
[exp]
141 / 9e-41 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1)
Lus10041532
[exp]
138 / 2e-40 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1)
Lus10029117
[exp]
110 / 1e-29 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1)
Lus10017193
[exp]
61 / 4e-11 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1)
Lus10022712
[exp]
47 / 6e-06 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0319 SHS2 PF04832 SOUL SOUL heme-binding protein
Representative CDS sequence
>Potri.012G088400.1 pacid=42782917 polypeptide=Potri.012G088400.1.p locus=Potri.012G088400 ID=Potri.012G088400.1.v4.1 annot-version=v4.1
ATGGAGAAACCAAGGTGGTGGTTGTTACTGTTACCTAGTATTGTATTGTTGAATTTGGTGGGTCTTTGCAAGGCAATCGAATCGCCACAATATGCTGTGG
TGCATGCAGAACCAGATTTCGAGGTGAGATTGTATGTGAATTCCACATGGATGTCTGCTCCAGTTAATGAACTCTCCTTTGAGAAAGCCACCTTGTTTGG
CTTTCACAGGTTGTTTCAATACATCCAGGGTGCCAATCTAAACTATTCGAGGATTGCAGTGACAGTTCCCGTAGTGACCAGCATAGTTCCAGGAGCTGGG
CCCTTCCGATCATCAGCCTATGTTGTTCGGTTTTATTTGCCTGTGAAACTCCAAGCTGACCCACCCGTCCCCCTTGATGAATTGCACCTGAAACCTTACG
CATGGAACAGTCATTGCGTTGCTGTGAGGAAGTTCTCTGGGTATGCGAAGGATGAGAATATTGCAGAGGAAGCAAAAAGACTCGCTGACAGTTTGAGCAG
GTCGCCATGGGCCAACTTAAGTTCTACCGAGAGCAATTATTCCTATTCTATTGCTCAGTATGATTCTCCATTCCAGTTTATTGGTCGTACCAACGAAGTG
TGGGCAGATATAAAAGTATCCGGAGCAGATGGCTGTAATTCCAGTGCAATAGCCTCTTACTGA
AA sequence
>Potri.012G088400.1 pacid=42782917 polypeptide=Potri.012G088400.1.p locus=Potri.012G088400 ID=Potri.012G088400.1.v4.1 annot-version=v4.1
MEKPRWWLLLLPSIVLLNLVGLCKAIESPQYAVVHAEPDFEVRLYVNSTWMSAPVNELSFEKATLFGFHRLFQYIQGANLNYSRIAVTVPVVTSIVPGAG
PFRSSAYVVRFYLPVKLQADPPVPLDELHLKPYAWNSHCVAVRKFSGYAKDENIAEEAKRLADSLSRSPWANLSSTESNYSYSIAQYDSPFQFIGRTNEV
WADIKVSGADGCNSSAIASY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17100 SOUL heme-binding family prote... Potri.012G088400
[exp]
0 1
AT1G75130 CYP721A1 "cytochrome P450, family 721, ... Potri.014G180500
[exp]
2.23 0.9234
Potri.010G219300
[exp]
6.32 0.9221
AT3G45080 P-loop containing nucleoside t... Potri.011G048700
[exp]
12.12 0.9070
AT5G48130 Phototropic-responsive NPH3 fa... Potri.014G164000
[exp]
12.44 0.8965
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.010G001000
[exp]
14.00 0.8540 Pt-ARR5.4
Potri.015G025600
[exp]
15.87 0.8804
AT5G52060 ATBAG1 BCL-2-associated athanogene 1 ... Potri.003G121500
[exp]
17.66 0.8611
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283212
[exp]
20.49 0.8961
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283204
[exp]
23.81 0.8941
Potri.007G026000
[exp]
25.45 0.8626

Potri.012G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.