Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24680 531 / 3e-163 MOS1 modifier of snc1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079800 [exp] 1984 / 0 AT4G24680 518 / 2e-158 modifier of snc1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001246 [exp] 902 / 0 AT4G24680 659 / 0.0 modifier of snc1 (.1) Lus10042094 [exp] 902 / 0 AT4G24680 656 / 0.0 modifier of snc1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G088500.7 pacid=42783211 polypeptide=Potri.012G088500.7.p locus=Potri.012G088500 ID=Potri.012G088500.7.v4.1 annot-version=v4.1 ATGACATCAAGTATGTTGACCGCAGAGCGCAGATGGGCTTCTGCAAGAAAAGGTGGCATGAAAGTTTTGGGGAAAGTTCCAGTTCCAAAACCAATAAACC TACCCAGCCAAAGGTTAGAAAATCATGGTCTGGACCCAAATGTTGAAATTGTGCCCAAGGGTACTCATAGCTGGGGCACCAGATCATCTTCTTCCACACC TAATGCCTGGGGTTCTTCAACGCTTTCTCCAAACACTGATGGTGGTAGTGGTTCTCCAAGCCATCTCAGTGGCCGCCCTTCATCTGGTGGAAGTGGCACT CGACCATCAACTGCAAGCAGTGATAGAACCCATGAACCCATCACTAATGCATGGGGTTCAAATTCTAGGCCATCTTCGGCATCAGGAGCATTGACATCAA ATCAAACATCACCTGTGCCGCTGCGTCCTCGCAGTGCAGAAACAAGACCTGGTAGCTCACAGTTATCTCGGTTTGCTGAACCGTTGTCTGATAATTCAGT GGCATGGGGTACAACTGGAACAGCAGAAAAGTTGGGTGTGACATCCTCTAAGAATGATGGGTTTTCTTTGACTTCTGGCGATTTTCCAACACTGGGTTCA GAAAAAGAAATCTCTGGAAAAAACTTGGAGTCCCAAGAGCATGGTTCTTACAGTCGTCCTGGTTCATCATCAAGTGTAGTAGCTCCAGGGAATGAGAGTA CTGGAAATTCTGCAGGTGATGCTTCTATAAAGACAAATGCAAAAATTGAATCTGCAAATTCTTGGAGGAGAGAGAATCCCATGTATGGTGAAGATGGGTT GAGGCCTAACATGGAGAAGTGGCACCTTGATCCCCATTTGTATCCTAATTCTAATATTCGTCATCAGAATTATGATTCTTGGCGCGGTCCCCCTGTAAAT AATCATCCTGGTGGTGTCTGGTACAGAGGGCCTCCAGGAGGTCCGCCTTTTGCACCCCCGATTGCTCCTGGTGGCTTTCCAATAGAGCCATTTCCTTATT ATCGTCCACAGATTCCCCCTGCTACTCTTGCCAACCCACAGCAAGGTCCTCCACCAGGATCTGGACCAAGAGGACCACATCCAAAGAATGGAGATGTGTT CAGACCCCATATGCATGATGCCTTTATTCGCCCAGGCATGCCATTTGGGCATGGCTTTTATCCTGGACCAGTCCCTTATGAGAACTACTATGGTCCTCCT GTGGGCTACTGCAATTCCAATGATCGAGATATTCAGTTTATGGGAATGACAGTGGGTCCTGCTCCCTATAACAGATATTCCGGTCAAAATACTCCTGATC CTGGAAATTCCCATGGAAGACCAGGTGGATATGGCCCTAGTGGTCACACGATGGTTTCTGAACAACTTGAGTCTGGTCATCAACAAGATACCCGAGGACC ATACAAAGTCCTTAAGCAGCACGATGGTTCAGAGGGAAAAGATGAAGAACACAAGTGGGATGCCATGATGACAACCAACACATCATATCCTGGGAAGGCA GACCATCAAAGAAAGTCATCGTGGGAGAATGGCTGGAGAGCAGATGACAAGAAAAATGGAGAGAGAGATACAAGAAGATATGGAGAAGAATTTTCTTTTG AGGCCACTGACAACCAAGGAGGTGCTAAAGTGAAACCTCTTGAACATGTGGGAAATTGGAAGGCTGCTGCTGATAGTTCAGTTAAGGAATTGGAACATTC AGAACATGCAGCATCTGCTTTTCCAGAAGTTCCAGCAGCCCCAAAAGATCCCAGTCTGATTAGGAAAATAGGTTTAAATGCAAAGGCCCAGGCCTCTGAT GGAAGGCAAGAAGTTAAATTTGTTTCCAGTAGAGAGGAGCAGAAGAATAGGTTACAAGTTGGTAATGCCAAGTCTAATCATTCTGCAAATGAAGCTGGTA CTAGTTATGTATCTCAAAGAACTCATGTCAGTGGCATTGTTGACGCTGGTTTCCATGAAGACCGCATTTCTGCTGCAGATAAGAGCCTTGAGGTACAAAA TGCTAATGAAACACCAAGCTCCAGGAGATCAACTCAAGGTATGCATGGAAGATCTGATCATCATGGAAAAGGGAGATTTATCACCCAAGAGCCTGATAGG TGGCAGAGAAGATCCCAAGTTGTAGACTCGCCGTGTGTATTGTCTTCTCATTTTGAAAGTTCTAATGTTTATAGGCAAGACCATAGTTTTGCGGAGGCAA CTGAAAAGTCTGGGTTATGTCATCAAGGGAAGGATGATGGAGTATCTGTGCCACCTCACCCTGATCCCGGTGATAGCCAGACACATCATGCTACTATTCA ACGGATTAAACAGCGAGAGAAGGAAGAGGAGGAATGGGAAAGAGAGCAAAAGGCCAAGGCACTTGCAAAAGAGTTGAATAAGTGGACAAAAGCAGCAGAA AGTTTAAGTGAGGTGCTGCCAGAGAAGCCAAAGGTGACCCATAAGGAGTCCATTGTGACACATGACCAATTGGAACCACTGCTACAGGATGTTAGTCATG CTGATGCTGATCACCCTGATAATGCCCCACAGATTCATGACAGTAGAGCTTCTAAGCAGAAGCGTGTGAGCTACAGACAGAAGCAGAATGGTCCCTTGGG AAAGACTTCCAATGATAAGTTATCATCTTCTACAACTGAAGCACCAAAAAATGTTACTGATATAGCAGCTAATGCTCCTGTTTCTCTTGAGGGTGTGAAC AAACTTACCTCAAACTCAGAATCAACTTTACCCATCAACCTAACTGCCATGGCCGAGTCTTCAGTAAATCATAGAAGGAAGAACAAGAATGGAAAGAACA AACACAAAATGGATGATGCATCAACATTGGCAGTTGTAACACCAACTCTATCAAAAGAATCAGCTGCTGCTTTAGACACTTCAGCTGGAAGTGGCAAGTC GGCTTCTGAATCTCTTTTGGATCCAAGCTCATTTCAGCCTCAGACTGATTCTAGAGATGGAAATCAGTCCATGGATCAACGCACATCATCACCAAACGAA GAAGCTCATGGAAGAGTAAATAACCAGTGGAAAGTGCAACATTTTCGCAGGATGCCAAGGAATCCACAAGCTAATAAATCAACTGAAAAATTCCCAAGTG GCGATGCTGTTATCTGGGCTCCTGTTCGGTCACAAAGTAAAATTGAGGCTGCTGATGAAGCCACTCAGAAGAACGTGGCTGATGCCATTAGGGCACCCAT GAAGAGTGATCAGCAAGTGCAGAATAATGCAAGAACTAAACGGGCAGAAATTGAAAGATACATTCCAAAACCTGTAGCCAAAGAAATGGCTCAGCAAGGA AGTAGTCCCCAGTCAGTGGCTCCATTAATCAATCAGATTACACCAAATGAGACTGCCGGAAAACCCGAATCTGGTTCTCCAAGCGTTGAAAGTTCTCAAA CCTCTTCCACAGGCATGGGAAAGGTAGGATCCACTTTGGAAGCTAAGAATGGCGATGGCAGGCAAAATAAGTCTGGAAAAATGCATGGATCATGGCGCCA GCGGGGATCAGCAGAATCAACCACATCTTTTACAAGTAGGAATGTTCAAAAATCAATTGAGCATCAAGTCCAGAAACCTGATGTAAGTTCACCAAAAGAG CAATTGAGTCATTCTGATGAATGGAATGAGCCTGATGGCTGGAACATTCTTGAAAATATTGATGTGCCAGTCACTACCCTTGCTATAAAAGATCAGGGTG CAACAGCCAGAGGTAGGCGGCAATCATACAGGGGACAAAAAGGCACAGGATATAGTCATGAGCCTGATGAGAAGAGAATTAATACTGGGGACACCGAAAA GGTTTATGTCCAAACTTCAGGCTCAGAGATGCATCAAGCTGACTTACCTGCAACTTCAAAAGAAAATCGGTCTGTTGGGGAAAGATCAGCATCTCATTGG CAACCTAAATCTCAGCCATTTTCAGCAACTAATCAGCGAGGAAGCAGGACCAATGGTGGTCAGAACACAGGCTCTGAAGTTGGTAGGGGTAATAAAAAGG ATTCCACTTCCCAAACTTTCATGCCACTGTTGTCTCAACCTGGCAGGGATATTGCTACAGTTAAGGCCCGGCCTCATCCTGATCGCTCTCTATCTGAAAA GAGCATTTTGGAAGAAGTTCCACGCACTGCGCATCAAGAGGGTAAGAATGGAAGGAAGATACCTTCACATAAAGGACGACGTCCTAGTAGCCCAGTTGAA CCATCTCCTTTGAATATGGATTTTCAACAAGAGCAACGTGTGTCTTCAGGGTTCCAAAAAAATGGAAACCAAAACAGCCGTTTCGGTGGAGAGCATGATT CTCGTGGCGAGTGGAGTGGTTCTGGGAAAGATAACAAGCAACAAAACGTACCTGCAAACCGTGAAAGGCAGATACAGAATACACATTATGAGTGCCAGCC AGTAGGGCCACAAAATACTTACAAAGCTAACAATTTTGAATCTTCAAAAGATGTTTCCCATAATTCTGTTGCAAGGTCCAGGGAGAGAGGTCAGGGTCGC TCAAGGCATGGCGGGGGAAACTCTCATGGATGGCAAACTGGTAGTAGTGTTCGAGTAGATGCCAATTATGATTAG
AA sequence Show only first row Show all	>Potri.012G088500.7 pacid=42783211 polypeptide=Potri.012G088500.7.p locus=Potri.012G088500 ID=Potri.012G088500.7.v4.1 annot-version=v4.1 MTSSMLTAERRWASARKGGMKVLGKVPVPKPINLPSQRLENHGLDPNVEIVPKGTHSWGTRSSSSTPNAWGSSTLSPNTDGGSGSPSHLSGRPSSGGSGT RPSTASSDRTHEPITNAWGSNSRPSSASGALTSNQTSPVPLRPRSAETRPGSSQLSRFAEPLSDNSVAWGTTGTAEKLGVTSSKNDGFSLTSGDFPTLGS EKEISGKNLESQEHGSYSRPGSSSSVVAPGNESTGNSAGDASIKTNAKIESANSWRRENPMYGEDGLRPNMEKWHLDPHLYPNSNIRHQNYDSWRGPPVN NHPGGVWYRGPPGGPPFAPPIAPGGFPIEPFPYYRPQIPPATLANPQQGPPPGSGPRGPHPKNGDVFRPHMHDAFIRPGMPFGHGFYPGPVPYENYYGPP VGYCNSNDRDIQFMGMTVGPAPYNRYSGQNTPDPGNSHGRPGGYGPSGHTMVSEQLESGHQQDTRGPYKVLKQHDGSEGKDEEHKWDAMMTTNTSYPGKA DHQRKSSWENGWRADDKKNGERDTRRYGEEFSFEATDNQGGAKVKPLEHVGNWKAAADSSVKELEHSEHAASAFPEVPAAPKDPSLIRKIGLNAKAQASD GRQEVKFVSSREEQKNRLQVGNAKSNHSANEAGTSYVSQRTHVSGIVDAGFHEDRISAADKSLEVQNANETPSSRRSTQGMHGRSDHHGKGRFITQEPDR WQRRSQVVDSPCVLSSHFESSNVYRQDHSFAEATEKSGLCHQGKDDGVSVPPHPDPGDSQTHHATIQRIKQREKEEEEWEREQKAKALAKELNKWTKAAE SLSEVLPEKPKVTHKESIVTHDQLEPLLQDVSHADADHPDNAPQIHDSRASKQKRVSYRQKQNGPLGKTSNDKLSSSTTEAPKNVTDIAANAPVSLEGVN KLTSNSESTLPINLTAMAESSVNHRRKNKNGKNKHKMDDASTLAVVTPTLSKESAAALDTSAGSGKSASESLLDPSSFQPQTDSRDGNQSMDQRTSSPNE EAHGRVNNQWKVQHFRRMPRNPQANKSTEKFPSGDAVIWAPVRSQSKIEAADEATQKNVADAIRAPMKSDQQVQNNARTKRAEIERYIPKPVAKEMAQQG SSPQSVAPLINQITPNETAGKPESGSPSVESSQTSSTGMGKVGSTLEAKNGDGRQNKSGKMHGSWRQRGSAESTTSFTSRNVQKSIEHQVQKPDVSSPKE QLSHSDEWNEPDGWNILENIDVPVTTLAIKDQGATARGRRQSYRGQKGTGYSHEPDEKRINTGDTEKVYVQTSGSEMHQADLPATSKENRSVGERSASHW QPKSQPFSATNQRGSRTNGGQNTGSEVGRGNKKDSTSQTFMPLLSQPGRDIATVKARPHPDRSLSEKSILEEVPRTAHQEGKNGRKIPSHKGRRPSSPVE PSPLNMDFQQEQRVSSGFQKNGNQNSRFGGEHDSRGEWSGSGKDNKQQNVPANRERQIQNTHYECQPVGPQNTYKANNFESSKDVSHNSVARSRERGQGR SRHGGGNSHGWQTGSSVRVDANYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	0	1
AT4G20020			unknown protein		Potri.004G218800 [exp]	3.74	0.8704
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	4.47	0.8372
					Potri.013G071800 [exp]	5.74	0.8565
AT3G50370			unknown protein		Potri.005G137700 [exp]	8.00	0.8671
					Potri.012G066900 [exp]	8.48	0.8496
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056400 [exp]	10.58	0.8494
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G276500 [exp]	10.95	0.8480
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	11.61	0.8347
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	12.44	0.8499
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	13.11	0.8549	Pt-CRP.3

Compare expression of checked genes

Potri.012G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.