Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63040 344 / 5e-117 unknown protein AT1G48460 163 / 5e-47 unknown protein AT3G60590 72 / 5e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038800 [exp] 158 / 6e-45 AT1G48460 343 / 2e-117 unknown protein Potri.014G061000 [exp] 68 / 2e-12 AT3G60590 382 / 9e-132 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039957 [exp] 441 / 5e-155 AT5G63040 323 / 5e-109 unknown protein Lus10027687 [exp] 429 / 2e-150 AT5G63040 321 / 6e-108 unknown protein Lus10032738 [exp] 127 / 2e-33 AT1G48460 246 / 2e-79 unknown protein Lus10015886 [exp] 71 / 4e-13 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G088700.3 pacid=42782863 polypeptide=Potri.012G088700.3.p locus=Potri.012G088700 ID=Potri.012G088700.3.v4.1 annot-version=v4.1 ATGGCTGTCAAAGTTGCTTCTTCTTCATTTTCTTGCATTGCCACTCCACTTTCTTCTCCTTTTAAACTAAGGAGAAGCTCCCAGCTGAGCTTGTCAGAAA GACCATATAATGGACTACATTATAAGCTTAGAAATGCTGATGTTCACTCGTGCCACTTCATAGATGATCTACCAAAATTAAAGGGAAAATTTCCCAGAAG GCAACATATTATCTTTGCAGCCTCTCAAGATCAGTCACAGTACAGTGAGATCAAACCAGATGCATCAGAAGAAGAAGATGACCATCCTACTGCTGAAGCT CTCCCTACTACTAGCAGTTCAATTAATCATTTCCCAGGAACTGATGGGAAACCTGGTTTAATTTCATTTTATAATCGCCCATATAAAATGGTGGATGAAG TCATTATATCTAATGTGCAAAGGAATCCAAGCAGTCTATTATGGTTCATTGGTCCTGCTGTCCTTGTAGCCTCTTTCATTTTCCCTTCGCTTTATTTACG CAAAATACTCTCTGCAGTATTCGAGGACTCTTTGCTTACAGATTTCCTCATATTGTTCTTCACGGAAGCTCTTTTCTACTGTGGTGTTGCTGTTTTTCTT CTGCTAATAGACCATTTAAGGAGGCCAGTGGAACCATTATCTTCTGTAAACAATAACAGAACCCTGGCTCCCCATTTGGGACAGCGAATCTCTTCTGTAG CTGCCTTGGTACTTAGTCTTATAATTCCCATGGTTACAATGGGCTTGGTCTGGCCGTGGACTGGCCCTGCAGCTTCCGCAACTCTTGCTCCATACCTGGT TGGTATCGTAGTACAATTTGCATTTGAGCAGTATGCAAGATACCGGAAGTCACCTTCTTGGCCTGTCATTCCAATCATCTTTCAAGTTTATAGATTGCAT CAACTGAATAGAGCCGCACAACTGGTGACAGCCCTGTCATTCACAGTGAGAGGAGCTGAAATGACCTCACACAATTTGGAGATAAGCAGCTCTTTAGGCA CACTTTTGAATGTCCTTCAATTCCTTGGGGTCATCTGCATTTGGTCGCTGTCAAGCTTCCTCATGAAATTTTTCCCACCAGCTGCCAGGACTGCAGAGTG A
AA sequence Show only first row Show all	>Potri.012G088700.3 pacid=42782863 polypeptide=Potri.012G088700.3.p locus=Potri.012G088700 ID=Potri.012G088700.3.v4.1 annot-version=v4.1 MAVKVASSSFSCIATPLSSPFKLRRSSQLSLSERPYNGLHYKLRNADVHSCHFIDDLPKLKGKFPRRQHIIFAASQDQSQYSEIKPDASEEEDDHPTAEA LPTTSSSINHFPGTDGKPGLISFYNRPYKMVDEVIISNVQRNPSSLLWFIGPAVLVASFIFPSLYLRKILSAVFEDSLLTDFLILFFTEALFYCGVAVFL LLIDHLRRPVEPLSSVNNNRTLAPHLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLH QLNRAAQLVTALSFTVRGAEMTSHNLEISSSLGTLLNVLQFLGVICIWSLSSFLMKFFPPAARTAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63040			unknown protein		Potri.012G088700 [exp]	0	1
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	15.65	0.9183
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	20.19	0.9168
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	21.90	0.9065
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	23.17	0.9148	VP2.2
AT2G20920			Protein of unknown function (D...		Potri.004G177300 [exp]	39.79	0.9094
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G098800 [exp]	43.35	0.9086
AT1G64355			unknown protein		Potri.003G138500 [exp]	60.87	0.8899
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	64.24	0.8949
AT5G08340			Nucleotidylyl transferase supe...		Potri.007G075500 [exp]	64.34	0.8957
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	67.97	0.8968

Compare expression of checked genes

Potri.012G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.