Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 699 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 660 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 386 / 3e-117 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 385 / 7e-117 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 383 / 2e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 364 / 8e-109 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 344 / 1e-101 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G36180 338 / 2e-99 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 338 / 2e-99 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 333 / 7e-98 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156200 [exp] 654 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 647 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G009300 [exp] 394 / 4e-120 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.019G120733 [exp] 395 / 2e-119 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 395 / 2e-119 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G065400 [exp] 384 / 4e-116 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G195100 [exp] 379 / 4e-114 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.011G139700 [exp] 370 / 2e-111 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G195200 [exp] 372 / 3e-111 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027688 [exp] 1117 / 0 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 574 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 507 / 1e-161 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023681 [exp] 375 / 8e-115 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10008230 [exp] 369 / 5e-112 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023323 [exp] 355 / 1e-105 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 353 / 9e-105 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10003612 [exp] 352 / 2e-104 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10014996 [exp] 348 / 2e-102 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10032954 [exp] 337 / 2e-99 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G088900.1 pacid=42784255 polypeptide=Potri.012G088900.1.p locus=Potri.012G088900 ID=Potri.012G088900.1.v4.1 annot-version=v4.1 ATGGGCAGCGCTCAAATGTGTAATTTGGTGCTGTTTCTGGCAATACTTCATGCTGTTCTTGCTGTTAGTCCTGGTGAAGATAATTCAGCAGAATCCTACT GGCTTCTGAGAATCAAATCAGAACTAGTTGATCCTGTTGGGGTTCTTGATAACTGGTCTCCAAGAGCTCATATGTGCAGCTGGAATGGACTTACATGTTC CCTTGATCAAACTCATGTTCTGGGCATGAACTTGTCAGGCTCAGGACTATCCGGTTCCATTTCACACGAGCTCTGGCATCTTACATCACTTCAAATACTC GACTTGTCTTCGAATTCTCTTACTGGCTCAATTCCTTCTGAGCTTGGAAAGCTTCAAAATTTGCAGATGCTGCTCCTCTATGCAAATTCTCTCTCTGGTA AAATTCCTGAAGAGATAGGCCTTTTGAAGAACTTGCAAGTTCTTAGGGTAGGAGATAACTTGTTATCAGGTGAGATTACACCAAGTATAGGCAACTTGAC TCAGTTGAGAGTGTTGGGTCTTGCCTACTGCCAATTTAATGGAAGCATTCCTTCTGGGATTGGTAATTTGAAGCATCTCGTATCTCTTGACTTGCAGAAG AACAGTCTCGATGGCCACATACCAGAAGAGATTCATGGCTGTGAAGAGCTTCAAAATCTCGCAGCATTAAACAACAAGCTTGAGGGAGATATCCCTGCTT CAATAGGGATGCTTAGATCGCTGCAAATATTGAACTTAGCCAATAACAGCCTTTCAGGTTCAATTCCAGTTGAGCTAGGCCAGCTCTCCAACTTGACGTA CTTGAGTTTACTTGGAAATAGATTGAGTGGCCGGATTCCTTCACAGCTTAACCAGTTGGTTCAGCTTGAGACACTTGACTTGTCAGTAAATAATTTCTCA GGAGCCATTAGCCTCTTCAATGCCCAATTGAAGAATCTTAGAACTTTAGTTCTGTCTAATAATGATTTGACAGGTAGCATCCCAAGCAACTTCTGCCTCA GCAATTCATCGAAACTGCAACAACTTTTTCTGTCTCGAAATAGTCTCTCTGGCAAGTTCCAATTGGATCTTCTCAACTGCCGCTCGCTCCAACAATTAGA CCTCTCTGATAACAATTTTGAAGGAGGGTTGCCGTCTGGCCTCGAGAAACTAGAGCACCTCACAGATCTTCTGCTCAATAATAACAGCTTCAGTGGAAAT TTACCTTCAGAAATCGGAAACATGAGTAACTTGGAAACTTTAATTCTTTTTGACAACATGATCACAGGGAGACTCCCACCAGAAATTGGCAAGTTGCAGA GGTTGAGTACCATCTATCTCTATGACAACCAGATGTCAGGAGGAATACCAAGAGAGTTAACAAACTGCACAAGCATGACAAAAATTGATTTCTTTGGAAA TCACTTTACGGGATCGATTCCTGCAACAATAGGGAAGCTTAAGAATCTGAACATGCTTCAACTGAGACAGAATGACTTGTCAGGTCCAATCCCACCGAGC TTGGGCTACTGCAAAAGGCTTCAGATCATGGCGTTGGCAGATAACAAGATCTCAGGAACCTTGCCAGAAACATTCAGATTCCTTACAGAACTGAACAAGA TAACTCTTTACAACAACTCCTTTGAAGGTCCTCTTCCCGCATCCCTCTTTCTTCTCAAAAACCTCAAAATCATCAATTTTTCACACAACAGGTTTAGCGG CAGCATTTCTCCCCTCTTGGGTTCAAATTCTCTTACTGCTTTAGACCTAACCAACAATAGCTTCTCTGGTCCCATTCCTTCTGAACTAACCCAGTCAAGA AATCTAAGCCGTCTCCGTCTTGCTCACAATCATCTTTCTGGAGAAATTCCTAGTGAGTTTGGCTCACTCACCAAGCTCAACTTCTTTGATTTGTCATTCA ACAACCTCACAGGAGAAGTGCCACCTCAGCTTTCAAACTGTAAAAAGATCCAACACTTCCTACTTAACAATAACCAGCTTGCAGGCACCATGCCTCCTTG GTTAGGGAGCTTAGAAGAACTTGGAGAACTAGATTTTTCATTCAATAACTTCCATGGAAATATACCTGCTGAGCTTGGCAACTGTTCAGGATTACTCAAG CTTTCTCTTCATAGCAACAAACTCTCAGGCAACATACCGCAGGAGATAGGAAACCTTACTTCTCTCAATGTCCTTAATCTTCAGAGAAACAATCTTTCAG GCTTGATCCCTTCAACAATCCAGGAGTGCGAGAAAATCTTTGAACTGAGGCTCTCAGAGAATTTCCTGACTGGTTCTATACCACCTGAGCTAGGAAAGCT GACCGAGTTGCAAGTGATCTTGGACCTGAGTGAAAATTCTTTCTCTGGTGAGATTCCATCTTCTCTTGGAAATCTGATGAAGTTAGAGGGATTGAACCTA TCTCTAAATCACCTCCAAGGAGAAGTACCTTTTTCACTTACAAAGCTGACCAGCCTTCACATGCTAAACCTGTCAAATAATGATCTCCAGGGCCAACTTC CTTCCACCTTTTCGGGATTCCCACTTAGCTCCTTCCTGGGCAATGACAAGCTATGCGGCCCACCATTAGTATCATGCTTGGAATCAGCGGGTCAAGAAAA AAGGGGGCTTTCAAACACTGCTGTTGTTGGTATTATAGTGGCCATTGTCTTTACTTCTTCTTTAATATGCTTGGTGATGCTTTATATGATAGTAAGAATC TGGTGTAATTGGAGACAAGTTACGATTTCGAGCATGGACGCTGGGGGCACTGAACAAAGAAGAGAAGAAGAAAAATCGGAGTATGGAGACAAGGAGAAGA GAAGGAATGGCGAGTACTGGAAGGTGAATTCCATGGCATTGGTTCCTTCACAAGATAAGCAAAGTCCTAGAACATGCATATTCCATTTCAAAATGGATAC AGAAATCACAGGGAATACATTGGTTTGA
AA sequence Show only first row Show all	>Potri.012G088900.1 pacid=42784255 polypeptide=Potri.012G088900.1.p locus=Potri.012G088900 ID=Potri.012G088900.1.v4.1 annot-version=v4.1 MGSAQMCNLVLFLAILHAVLAVSPGEDNSAESYWLLRIKSELVDPVGVLDNWSPRAHMCSWNGLTCSLDQTHVLGMNLSGSGLSGSISHELWHLTSLQIL DLSSNSLTGSIPSELGKLQNLQMLLLYANSLSGKIPEEIGLLKNLQVLRVGDNLLSGEITPSIGNLTQLRVLGLAYCQFNGSIPSGIGNLKHLVSLDLQK NSLDGHIPEEIHGCEELQNLAALNNKLEGDIPASIGMLRSLQILNLANNSLSGSIPVELGQLSNLTYLSLLGNRLSGRIPSQLNQLVQLETLDLSVNNFS GAISLFNAQLKNLRTLVLSNNDLTGSIPSNFCLSNSSKLQQLFLSRNSLSGKFQLDLLNCRSLQQLDLSDNNFEGGLPSGLEKLEHLTDLLLNNNSFSGN LPSEIGNMSNLETLILFDNMITGRLPPEIGKLQRLSTIYLYDNQMSGGIPRELTNCTSMTKIDFFGNHFTGSIPATIGKLKNLNMLQLRQNDLSGPIPPS LGYCKRLQIMALADNKISGTLPETFRFLTELNKITLYNNSFEGPLPASLFLLKNLKIINFSHNRFSGSISPLLGSNSLTALDLTNNSFSGPIPSELTQSR NLSRLRLAHNHLSGEIPSEFGSLTKLNFFDLSFNNLTGEVPPQLSNCKKIQHFLLNNNQLAGTMPPWLGSLEELGELDFSFNNFHGNIPAELGNCSGLLK LSLHSNKLSGNIPQEIGNLTSLNVLNLQRNNLSGLIPSTIQECEKIFELRLSENFLTGSIPPELGKLTELQVILDLSENSFSGEIPSSLGNLMKLEGLNL SLNHLQGEVPFSLTKLTSLHMLNLSNNDLQGQLPSTFSGFPLSSFLGNDKLCGPPLVSCLESAGQEKRGLSNTAVVGIIVAIVFTSSLICLVMLYMIVRI WCNWRQVTISSMDAGGTEQRREEEKSEYGDKEKRRNGEYWKVNSMALVPSQDKQSPRTCIFHFKMDTEITGNTLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.012G088900 [exp]	0	1
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	1.73	0.8325
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	7.14	0.7945	Pt-ATHK1.2
					Potri.003G105450 [exp]	9.16	0.7710
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145700 [exp]	9.16	0.7738
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	12.24	0.7961
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	13.85	0.7693	ATHK1.3
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	19.36	0.7808
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	19.79	0.7880
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	20.39	0.7615
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	23.81	0.7425

Compare expression of checked genes

Potri.012G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.