Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WR3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24730 177 / 6e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) AT5G50200 168 / 7e-53 WR3, ATNRT3.1, NRT3.1 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085100 [exp] 298 / 5e-104 AT5G50200 182 / 3e-58 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Potri.015G085000 [exp] 290 / 1e-100 AT5G50200 184 / 5e-59 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041950 [exp] 221 / 3e-73 AT5G50200 206 / 2e-67 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Lus10017960 [exp] 133 / 2e-39 AT4G24730 96 / 5e-25 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16974 [poplar] [flax] NAR2 High-affinity nitrate transporter accessory
Representative CDS sequence Show only first row Show all	>Potri.012G089300.1 pacid=42783684 polypeptide=Potri.012G089300.1.p locus=Potri.012G089300 ID=Potri.012G089300.1.v4.1 annot-version=v4.1 ATGGCAGCACGTCGTCTTCTCTTGGCATCCCTTGTTCTCTCTTGCTCTCTACTGCCTTGCTATCAAGCTGTTCTCTTCTCCTCTCTGCAAAAAACTCTTG CGGTCACGGCTTCACCAACATCAGGACAAGTGTTGAAAGGTGGTGTAGACAAGATCACTGTGACATGGGGGCTAAACCAAACCCTCGCAGCCGGGACCGA CTCGACCTACAAGACGATCAAGGTCAAACTATGCTACGCGCCCCTGAGCCAAGTAGACCGCGCCTGGAGAAAAACTGTAGACCGCATAAAGAAGGACAGG ACTTGCCAGCATAAGATCGTCGCCAGGCCTTACAACTCTGCCAACAAGACCTTCCAATCCCTCGAGTGGACTGTTCAACGTGACGTGCCCACTGCCACGT ACTTCATACGTGCCTATGCCTATAACGCCGATGAGAGCGAGGTGGCTTACGGGCAAACAACAGATGCACACAAGACCACAAATCTGTTTCAAGTGGAATC AATCACCGGCCGCCACATGGCAATGGATGTTTGCTCAATTTGCTTTAGTGTCTTCTCTGTTGTGTCCTTGCTTGTTTTCTTCTACATCGAGAAGAGAAAG TCAAAGAGATCTCAGTAA
AA sequence Show only first row Show all	>Potri.012G089300.1 pacid=42783684 polypeptide=Potri.012G089300.1.p locus=Potri.012G089300 ID=Potri.012G089300.1.v4.1 annot-version=v4.1 MAARRLLLASLVLSCSLLPCYQAVLFSSLQKTLAVTASPTSGQVLKGGVDKITVTWGLNQTLAAGTDSTYKTIKVKLCYAPLSQVDRAWRKTVDRIKKDR TCQHKIVARPYNSANKTFQSLEWTVQRDVPTATYFIRAYAYNADESEVAYGQTTDAHKTTNLFQVESITGRHMAMDVCSICFSVFSVVSLLVFFYIEKRK SKRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	0	1	WR3.1
					Potri.010G223733 [exp]	3.16	0.8606
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	4.24	0.8212
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	4.58	0.8176	CESA2.3
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.008G129500 [exp]	9.16	0.7671
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	9.94	0.7856
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	13.49	0.7883	Pt-STGA1.4
					Potri.007G048600 [exp]	13.85	0.8095
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	14.31	0.7994
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.008G160200 [exp]	20.49	0.7490	CIPK4.1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102800 [exp]	22.60	0.7276

Compare expression of checked genes

Potri.012G089300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.