Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24730 440 / 3e-156 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085232 [exp] 241 / 1e-80 AT4G24730 177 / 4e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019465 [exp] 473 / 2e-169 AT4G24730 443 / 6e-158 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) Lus10043315 [exp] 392 / 4e-137 AT4G24730 373 / 3e-130 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.012G089400.4 pacid=42783950 polypeptide=Potri.012G089400.4.p locus=Potri.012G089400 ID=Potri.012G089400.4.v4.1 annot-version=v4.1 ATGGTGAATAGCGGTATCTGTGCTGGGGATGCAATGGGGTCAATAAATGGATTGGTAAGTCCACCTGGGAAGCGACCTCTTTTTTCATTTGGTGTAATCT CTGATGTCCAGTATGCTGATATTCCTGATGGTCATTCATTCCTTGGTGTTCCCCGGTATTATCGACATAGCATCCATGTATTGCAAAGGGCAGTACAAAA GTGGAATAACCACCAGAATCTTAACTTTGTGATCAACTTTGGGGATATTGTGGATGGGAAATGTCCTCCAGGCCAATCTCTAGATGCTGTAAAGAAAGTA AATAATGAATTCCAGAAAATCAATGGTCCTGTTTATCACTTGATTGGCAATCACTGTCTCTACAATCTTCCCCGTGACAAATTACTACCACTATTGAAGA TCCAAGGTCTCAATGGCCTTGCCTACTATGATTTTTCACCTAGTCCAGAATACAGAATCGTCGTGCTGGATGGCTATGATATCAGTGCAATTGGATGGCC ACAAGGTCATTCTAAAACTTTACAAGCACTAGAATTTCTTGAAAAGAAGAACCCAAATTCAGATAAAAACAGCCCATCAGGATTGCTGGGCCTTGATAGG AGGTTTGTAATGTTCAATGGAGCTGTTGGGAAAGAGCAACTTGAATGGTTGGATGGCACACTTCAGGATGCAACAAAGCTGAAGCAGAAAGTGATCGTTT GTTGTCATCTGCCTTTGGATGTTGTTGCATCATCTCAAGAAGCACTTCTATGGAACTATGATGAAGTAATGAACGTAATCCACCAGTACAATTGTGTCAA GGCTTGCCTTTCTGGACATGATCACAAAGGTGGGTATTCAGTTGATTCCCATGGAGTACACCACAGGTCCTTTGAAGCAGCCCTTGAGTGTCCTCCTGAC ACAGATGCATACGGACATATCGATGTTTATGACGACAGGCTACTGCTTTTTGGTACCGATAGGATTCAGAGCACCGAAATGTGTTTTAATCCTTAA
AA sequence Show only first row Show all	>Potri.012G089400.4 pacid=42783950 polypeptide=Potri.012G089400.4.p locus=Potri.012G089400 ID=Potri.012G089400.4.v4.1 annot-version=v4.1 MVNSGICAGDAMGSINGLVSPPGKRPLFSFGVISDVQYADIPDGHSFLGVPRYYRHSIHVLQRAVQKWNNHQNLNFVINFGDIVDGKCPPGQSLDAVKKV NNEFQKINGPVYHLIGNHCLYNLPRDKLLPLLKIQGLNGLAYYDFSPSPEYRIVVLDGYDISAIGWPQGHSKTLQALEFLEKKNPNSDKNSPSGLLGLDR RFVMFNGAVGKEQLEWLDGTLQDATKLKQKVIVCCHLPLDVVASSQEALLWNYDEVMNVIHQYNCVKACLSGHDHKGGYSVDSHGVHHRSFEAALECPPD TDAYGHIDVYDDRLLLFGTDRIQSTEMCFNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089400 [exp]	0	1
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	17.66	0.8331
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083300 [exp]	48.92	0.8012
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G098200 [exp]	59.42	0.7774
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.009G059300 [exp]	66.07	0.7825
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.010G153400 [exp]	206.15	0.7719
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024801 [exp]	207.40	0.7730
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	212.97	0.7645	MYB194

Compare expression of checked genes

Potri.012G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.