Plant FIBer expression Database

Potri.012G089500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50210 401 / 1e-134 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
AT1G67810 195 / 2e-60 SUFE2 sulfur E2 (.1)
AT4G26500 81 / 8e-17 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G085300
[exp]
544 / 0 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Potri.005G112150
[exp]
82 / 4e-19 ND /
Potri.011G165400
[exp]
86 / 2e-18 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Potri.001G468300
[exp]
85 / 3e-18 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043314
[exp]
420 / 6e-142 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Lus10019464
[exp]
416 / 3e-140 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Lus10006468
[exp]
161 / 2e-47 AT1G67810 189 / 1e-59 sulfur E2 (.1)
Lus10011408
[exp]
141 / 1e-39 AT1G67810 167 / 3e-51 sulfur E2 (.1)
Lus10032905
[exp]
82 / 4e-17 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Lus10015605
[exp]
81 / 2e-16 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0233 SufE_NifU PF02657 SufE Fe-S metabolism associated domain
Representative CDS sequence
>Potri.012G089500.3 pacid=42782848 polypeptide=Potri.012G089500.3.p locus=Potri.012G089500 ID=Potri.012G089500.3.v4.1 annot-version=v4.1
ATGTACTCCTCCGCAACTGCAACAATCTCCTCCATAAAAACAACCATCTCACCAAACCCTAAACCCACCAAGAAAAACCCACTTTTCCCCTTCGAAAAAA
CCAAACTTCTTTCTTTCTCCTCCTTCAAATCTCTTAAATGCATCCACTCACCACCTTCAAACCCAAAACCTTCAAATTCCTCACCTTTAACCTGCACAGC
AGTCACCTTTTCTCCTTCACAGACAACCGAGCTTGTCCCAAGTAAGCTTCACCATTTAATCACCGAGTTCAAGTCCCTCTCTCAACCAATCGACCGTGTT
AAACGCCTCCTCCACTATGCAACCCTCCTCTCTCCACTACCAGACTCTTCCCGGGTCGATTCCAATCGGGTCATGGGCTGTACTGCCCTGGTCTGGTTGG
AGGCACAGTTAGACAAATATGGCAAAATGATGTTTTGGGCTGATAGCGACTCAGAGATTACAAGAGGTTTTTGTGCTTGTTTAATTTGGGTGCTTGATGG
GGCGCTGCCAGAGGAGGTTTTGAAGGTGACAACAGAGGATTTGGCAGCTTTGAATATTGGATTGCATGGTGGAGCGAGGTCGAGAGTGAATACTTGGCAT
AATGTTTTGGTTAGTATGCAAAAGAGAGTGAGGATATTGGTGGCTGAAAGAGATGGGAAGAAGGATTTTGATCCGTTTCCATCCCTGACTGTTAGTTCTG
ATGGGGTTCAGGCGAAGGGGAGTTATGCCGAGGCTCAGGCAAGATACTTGTTCCCGGATGAATCTAAGGTTCAAGAGATTGTCAATGTGTTAAAGGAGAA
GAAAATTGGTGTTGTTTCTCTTTCTTACATGGATCCTGAAGTTCAAGGTATCTTGACTGCTGCACAGAAGCACTGGCCTCACATCCACATATCTGATACG
TTGGTCATGGCAGATAGTGCTGTTGAGATGGCTGAAGGCGGGTGCAAGTTCATCACTGTTTTGGGTGTGGATTTTATGTCAGAAAATGTGCGTGCAACCC
TTGATCAAGCTGGCTTTGGAGAGGTGTTTCATTCTTGTTGCTCGTTTTTCTTGTATCGGTTTCCTTGGTCATTTCTTTACTGGTTGGTGTGTACAGGATG
TCAAATGAGCGCATTGGTGGTTCTTTAG
AA sequence
>Potri.012G089500.3 pacid=42782848 polypeptide=Potri.012G089500.3.p locus=Potri.012G089500 ID=Potri.012G089500.3.v4.1 annot-version=v4.1
MYSSATATISSIKTTISPNPKPTKKNPLFPFEKTKLLSFSSFKSLKCIHSPPSNPKPSNSSPLTCTAVTFSPSQTTELVPSKLHHLITEFKSLSQPIDRV
KRLLHYATLLSPLPDSSRVDSNRVMGCTALVWLEAQLDKYGKMMFWADSDSEITRGFCACLIWVLDGALPEEVLKVTTEDLAALNIGLHGGARSRVNTWH
NVLVSMQKRVRILVAERDGKKDFDPFPSLTVSSDGVQAKGSYAEAQARYLFPDESKVQEIVNVLKEKKIGVVSLSYMDPEVQGILTAAQKHWPHIHISDT
LVMADSAVEMAEGGCKFITVLGVDFMSENVRATLDQAGFGEVFHSCCSFFLYRFPWSFLYWLVCTGCQMSALVVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.012G089500
[exp]
0 1
AT3G11450 DnaJ domain ;Myb-like DNA-bind... Potri.001G035800
[exp]
3.74 0.8042
AT2G30020 Protein phosphatase 2C family ... Potri.010G187000
[exp]
4.47 0.7907
Potri.005G040650
[exp]
5.83 0.8586
AT3G24090 glutamine-fructose-6-phosphate... Potri.019G054500
[exp]
11.83 0.8313
AT2G24580 FAD-dependent oxidoreductase f... Potri.018G008700
[exp]
13.19 0.8363
AT3G61760 ADL1B DYNAMIN-like 1B (.1) Potri.002G171200
[exp]
13.26 0.7861
AT4G19460 UDP-Glycosyltransferase superf... Potri.003G105500
[exp]
19.41 0.8158
AT3G29770 ATMES11 ARABIDOPSIS THALIANA METHYL ES... Potri.004G116500
[exp]
23.87 0.7977
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.004G179300
[exp]
25.09 0.8241 Pt-ZOG1.14
AT5G49700 AT-hook Predicted AT-hook DNA-binding ... Potri.002G105000
[exp]
25.37 0.7656

Potri.012G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.