Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 386 / 1e-129 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G25120 368 / 2e-122 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT2G30770 368 / 2e-122 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G48290 367 / 2e-122 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT1G13080 367 / 5e-122 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48280 364 / 3e-121 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26310 363 / 1e-120 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48270 363 / 1e-120 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26300 362 / 4e-120 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 360 / 1e-119 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085600 [exp] 596 / 0 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137600 [exp] 515 / 9e-180 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 471 / 9e-164 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G086000 [exp] 406 / 2e-137 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G089900 [exp] 404 / 2e-136 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 400 / 1e-134 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G085800 [exp] 393 / 7e-132 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025300 [exp] 379 / 1e-126 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.007G074900 [exp] 377 / 7e-126 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019459 [exp] 515 / 1e-179 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043313 [exp] 483 / 3e-167 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 456 / 1e-156 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10017961 [exp] 402 / 4e-135 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 392 / 1e-131 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 383 / 5e-128 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 380 / 4e-127 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10040120 [exp] 379 / 2e-126 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 377 / 2e-125 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 374 / 1e-124 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G089600.1 pacid=42783127 polypeptide=Potri.012G089600.1.p locus=Potri.012G089600 ID=Potri.012G089600.1.v4.1 annot-version=v4.1 ATGGATCCTTCGATTTTTTTGCACCAGTATTGGCTAGAATTGGATAGAACAATCTTGTTCAGTGTCCTGGTTCTTCCATTTCTGGCTTTCTGCACTATTT ATTTCATCAAGTCCATTCAAACAGACAAGCTCAACTTACCTCCATCCCCATTGAAGCTGCCACTGATAGGAAATCTTCACCAGGTAGGCAGGCTCCCCCA TAGGTCACTCCGTACCCTGTCTGAGAAGTATGGATCTTTAATGCTCTTACACCTTGGCAGTTCTCCTGCTCTCATTGTTTCCTCAGCAGAGACAGCCAAA GAGATCTTGAAGACACATGACAAAGCTTTCTTGGATAAACCTCAAACAAGGGCTGGAGATGCTCTCTTTTATGGAAGCAGTGACATAGCATTTTGTTCTT ATGGTAACTATTGGAGACAAGCGAAAAAAGTATGTGTCCTTGAACTCCTGAGCCAAAGAAGGGTGCAGGCATTTCAATTCGCCAGGGAAGAAGAAGTGGG GAAAATGGTTGAGAAAATACAGATTTCATGCCTCAGTAAAGTTGCCATTGATCTTGGTGCGGCGTTTTTAACCATCTCTAATGACATACTATCTAGATCT GCTTTTGGAAGAACATATGAAGAAGTAGATGGTCAGCAGCTGGGAGAATTGTGGAGGACGGCTATGGACCTGATTGGAGAGTTCTGCTTTAAAGACTTCT TTCCCTTGTTGGGTTGGATGGATGTTATTACTGGTTTAGTTTCTAAACTGAAGAGGACTTCCAAAGCACTTGATGCTTTTCTCGATCAAGTGATTGAAGA ACATTTGGTTTCCAGGACTGAAGATGACATATCTGATAAGAAAGACTTGGTAGATATTCTACTTCGTATTCAGAAGAATGGAATGACCGACATTGATCTC AGTCGAGACAACCTCAAAGCAATCCTCATGGATATGTTTCTTGGAGCAACAGATACTACTGCAACCACCATGGAATGGGCAATGGCAGAACTAGTGAATA ATCCAAGTGCAATGAAGAAAGTCCAAGAAGAAGTAAGAGGTGTTGTCGGAGAAAAATCCAAGGTCGAAGAAATTGATATCGATCAAATGGACTTCTTAAA GTGTATTGTGAAAGAGACTCTGAGGTTACATCCGCCTCTCTTTATTGGCCGGAGAACATCTGCAAGTCTTGAATTGGAAGGCTATCACATCCCTGCCAAT TTGAAAGTGCTGATCAATGCGTGGGCGATTCAACGTGACCCCAAATTGTGGGATAGTCCTGAAGAGTTTATCCCAGAGAGATTTGCAAATAAATCAGTTG ATTTTAAAGGCCAAAACCACCAATTCATTCCTTTTGGTGCTGGCAGAAGGGGTTGCCCTGGAATTGCGTTTGCAGTTGTAGAAGTTGAATATGTTCTAGC TAATATCTTGTATTGGTTTGACTGGGAGTTTCCTGAAGGCATCACCGCAGAGGATTTAGATATGAGTGAGGTGTTTACACCAGTTATTCGTAAGAAATCA CCTCTTCGTCTTGTTCCTGTAGCCCACTTTCCAAAAACGATCTGTAACTGA
AA sequence Show only first row Show all	>Potri.012G089600.1 pacid=42783127 polypeptide=Potri.012G089600.1.p locus=Potri.012G089600 ID=Potri.012G089600.1.v4.1 annot-version=v4.1 MDPSIFLHQYWLELDRTILFSVLVLPFLAFCTIYFIKSIQTDKLNLPPSPLKLPLIGNLHQVGRLPHRSLRTLSEKYGSLMLLHLGSSPALIVSSAETAK EILKTHDKAFLDKPQTRAGDALFYGSSDIAFCSYGNYWRQAKKVCVLELLSQRRVQAFQFAREEEVGKMVEKIQISCLSKVAIDLGAAFLTISNDILSRS AFGRTYEEVDGQQLGELWRTAMDLIGEFCFKDFFPLLGWMDVITGLVSKLKRTSKALDAFLDQVIEEHLVSRTEDDISDKKDLVDILLRIQKNGMTDIDL SRDNLKAILMDMFLGATDTTATTMEWAMAELVNNPSAMKKVQEEVRGVVGEKSKVEEIDIDQMDFLKCIVKETLRLHPPLFIGRRTSASLELEGYHIPAN LKVLINAWAIQRDPKLWDSPEEFIPERFANKSVDFKGQNHQFIPFGAGRRGCPGIAFAVVEVEYVLANILYWFDWEFPEGITAEDLDMSEVFTPVIRKKS PLRLVPVAHFPKTICN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	4.12	0.9414
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.008G080000 [exp]	6.16	0.9359
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	8.66	0.9328
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007000 [exp]	8.71	0.9313	IFS1.39
AT3G06240			F-box family protein (.1)		Potri.001G318400 [exp]	10.00	0.9297
					Potri.007G026000 [exp]	11.48	0.8842
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119600 [exp]	11.83	0.9187
AT3G45080			P-loop containing nucleoside t...		Potri.011G048700 [exp]	13.56	0.9262
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	14.49	0.9293
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003600 [exp]	15.58	0.9261

Compare expression of checked genes

Potri.012G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.