Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 744 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 616 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 508 / 5e-180 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 172 / 7e-47 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 163 / 6e-44 Protein kinase superfamily protein (.1.2) AT3G17750 163 / 1e-43 Protein kinase superfamily protein (.1) AT3G53640 160 / 3e-43 Protein kinase superfamily protein (.1) AT1G73450 162 / 4e-43 Protein kinase superfamily protein (.1) AT1G73460 162 / 4e-43 Protein kinase superfamily protein (.1) AT2G40120 159 / 4e-43 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085700 [exp] 842 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 666 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 651 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 636 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G244400 [exp] 547 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G075300 [exp] 175 / 1e-47 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 173 / 6e-47 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G188400 [exp] 164 / 3e-44 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 164 / 6e-44 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019458 [exp] 749 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 749 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 664 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 634 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 630 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10006230 [exp] 264 / 2e-86 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 197 / 3e-61 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 169 / 2e-45 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 168 / 3e-45 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 163 / 2e-43 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G089700.1 pacid=42783049 polypeptide=Potri.012G089700.1.p locus=Potri.012G089700 ID=Potri.012G089700.1.v4.1 annot-version=v4.1 ATGGAGTTGGAACACGTGACCGTCTTTCCCATAACGCACCTGGATCGACCAAGGAAGAGAGCGCGTTTTGCCTGGGACGTGCCTCAGGCCCAGGTAGGAA TATTTTGTGGACAAGAGGTTGGAAATGTAGCAAGCTATGCATCTTCAGGAGCAATCTCAGACCATACTAGTTCTCTGTTTGTAAAAGGAGTGGCTCGAAA TGGTTCTCCCCCATGGAGGGAAGATGACAAGGATGGTCATTACATGTTTGCGCTTGGAGATAATTTAACTTCCCGCTACAAGATACACAGCAAAATGGGA GAAGGCACCTTCGGTCAGGTTTTGGAATGCTGGGATAGAGAAAGAAAGGAAATGGTCGCCATCAAAATTGTACGTGGCATCAAGAAATATAGGGAAGCAG CTATGATAGAGATTGAAGTGCTGCAAAATCTTGGTAAACATGATAAAGGGAGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATAT TTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTTCGCAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGA CAACTGTTGGAATGTGTAGCATTTATGCATGACCTGCGTATGATACATACTGATTTGAAGCCTGAGAACATACTCCTAGTTTCTTCTGACTATGTAAAAG TTCCTGATTACAAGAACTCATCTCGTTCACCAAAGGACATTTCCTACTATAAAAGAGTCCCAAAATCAAGTGCCATTAAGGTAATTGATTTTGGTAGCAC AACTTATGAGCGACAAGATCAGAATTACATTGTATCAACACGGCATTATCGTGCACCAGAAGTTATTCTTGGACTTGGATGGAGTTATCCTTGTGATATA TGGAGTGCTGGTTGCATCTTAGTGGAGTTATGCACTGGTGAGGCTTTATTCCAAACACATGAAAATTTGGAACATCTTGCAATGATGGAACGTGTGCTTG GTCCTATGCCACAGCATATACTGAAGAGAGTGGATCGACATGCAGGGAAGTATGTCAGAAGGGGTAGGCTGGACTGGCCAGAGGGAGCTGCTTCAAGAGA AAGCATGAAAGCTGTTTTGAAGCTACCCCGACTTCAGAATCTAGTAATGCAACATGTGGACCAGTCTGCTGGAGATCTTATACATCTCCTGCAAGGACTG CTTAGATATGATCCCTTGGACAGGTTAACAGCTCGAGAAGCTCTGAGACATCCCTTCTTAGCAAAAGTTCAGCATAGGAGGTGA
AA sequence Show only first row Show all	>Potri.012G089700.1 pacid=42783049 polypeptide=Potri.012G089700.1.p locus=Potri.012G089700 ID=Potri.012G089700.1.v4.1 annot-version=v4.1 MELEHVTVFPITHLDRPRKRARFAWDVPQAQVGIFCGQEVGNVASYASSGAISDHTSSLFVKGVARNGSPPWREDDKDGHYMFALGDNLTSRYKIHSKMG EGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQNLGKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGR QLLECVAFMHDLRMIHTDLKPENILLVSSDYVKVPDYKNSSRSPKDISYYKRVPKSSAIKVIDFGSTTYERQDQNYIVSTRHYRAPEVILGLGWSYPCDI WSAGCILVELCTGEALFQTHENLEHLAMMERVLGPMPQHILKRVDRHAGKYVRRGRLDWPEGAASRESMKAVLKLPRLQNLVMQHVDQSAGDLIHLLQGL LRYDPLDRLTAREALRHPFLAKVQHRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	0	1
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	5.74	0.7088	Pt-BON1.3
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	7.41	0.6805
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	8.06	0.7323
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.002G071800 [exp]	9.16	0.7126
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	10.95	0.7063
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	12.00	0.7086
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	14.69	0.6989
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.008G132900 [exp]	15.29	0.6638
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	15.65	0.6961
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G043400 [exp]	16.49	0.6659

Compare expression of checked genes

Potri.012G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.