Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP71AP2v1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 429 / 1e-146 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26330 426 / 2e-145 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 424 / 2e-144 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48270 421 / 2e-143 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT4G13310 417 / 1e-141 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT1G13080 416 / 5e-141 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48310 414 / 7e-141 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G25140 414 / 9e-141 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT1G13110 414 / 1e-140 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26300 414 / 1e-140 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090000 [exp] 949 / 0 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 911 / 0 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.015G085800 [exp] 489 / 8e-170 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.008G223500 [exp] 454 / 4e-156 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.002G025800 [exp] 450 / 2e-154 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 449 / 6e-154 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.016G137600 [exp] 447 / 4e-153 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025500 [exp] 445 / 2e-152 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 444 / 3e-152 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017961 [exp] 484 / 2e-167 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016601 [exp] 469 / 1e-161 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10041951 [exp] 466 / 1e-160 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 462 / 3e-159 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 457 / 2e-157 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10006443 [exp] 447 / 4e-153 AT3G26310 366 / 2e-121 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) Lus10033172 [exp] 440 / 9e-151 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10030924 [exp] 441 / 1e-150 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024315 [exp] 439 / 4e-150 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10030708 [exp] 437 / 4e-149 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G089900.1 pacid=42783635 polypeptide=Potri.012G089900.1.p locus=Potri.012G089900 ID=Potri.012G089900.1.v4.1 annot-version=v4.1 ATGAGTTTACTACAATGGCTGAAAGAATGCTCCAAACCTACCTTGTTCGTTGTAACTATTTTTCTAGTAGTAGTGCTCAAGTTTCTCATGAAGGACAAGC TGAAAAAGAGGAAGCTCAATCTCCCACCAAGCCCTGCAAAATTGCCAATCATTGGTAACCTTCACCAGCTTGGTAATATGCCTCACATCTCTCTCCGAGG GCTTGCCAAGAAGTATGGTCCCATCATTTTCTTACAGCTTGGGGAGATCCCAACTGTAGTGATTTCATCAGCTGGATTGGCAAAAGAAGTCCTGAAAACT CATGATCTTGTATTGTCTAGCCGTCCGCAGCTCTTTTCAGCCAAACACTTGTTGTATGGTTGCACTGATATCGCTTTTGCTCCTTATGGTGCTTACTGGA GGAATATAAGGAAGATTTGCATACTTGAGCTACTCAGTGCCAAGCGTGTCCGTTCGTACAGCTATGTTAGAGAAGAAGAAGTTGCTCGCTTGATTCGTCG GATTGCAGAATCTTATCCTGGCATCACCAATCTAAGCTCGATGATTGCACTATATGCCAATGATGTTCTTTGTCGGGTTGCGCTAGGAAGGGATTTCTCT GGAGGAGGAGAGTATGATCGGCACGGGTTCCAAAAGATGCTTGACAATTTTCAAGCATTGCTTGGAGGATTCAGTCTTGGAGACTATTTTCCTTCGATGG AGTTTGTGCACAGTCTAACTGGAATGAAATCGAAACTCCAGTACACCTTCAGACGGTTTGATCAGTTCTTCGATGAGGTGATAGCTGAGCACCGCAATTC TAAGGGAAAACAAGAGGAGAAGAAGGACCTTGTTGACGTTCTACTTGATATTCAGAAGGATGGATCTTCTGAAATTCCTCTCACCATGGATAACATTAAA GCTGTCATCTTGGACATGTTTGCTGGAGGAACAGATACCACCTTCATAACCCTTGATTGGGCAATGACAGAGCTTATCATGAATCCTCATGTCATGGAGA AAGCACAAGCTGAAGTACGAAGTGTTGTCGGAGACAGAAGAGTGGTGCAAGAGAGTGATCTGCCCCGGCTGAACTACATGAAAGCTGTTATCAAAGAGAT CTTACGGTTACATCCTGCCGCTCCAGTTTTACTCCCAAGAGAATCTTTAGAAGATGTTATAATTGATGGCTACAACATTCCAGCTAAAACTCGGATTTAT GTCAATGTCTGGGGAATGGGGAGGGATCCAGAACTGTGGGAAAATCCTGAAACTTTTGAACCAGAAAGATTTATGGGCAGCGGTATAGATTTCAAGGGGC AAGATTTTGAGCTGATACCATTTGGAGCAGGTAGAAGAAGCTGCCCAGCCATCACATTTGGAATCGCAACCGTTGAAATTGCTTTAGTTCAACTCCTCCA CAGCTTTGATTGGAAGCTTCCTCCTGGCCTTGAAGCAAAGGATATAGACAATACAGAAGCTTTTGGCGTCTCATTGCACAGGACAGTTCCCCTGCACGTC ATTGCAAAACCACACTTCAATTGA
AA sequence Show only first row Show all	>Potri.012G089900.1 pacid=42783635 polypeptide=Potri.012G089900.1.p locus=Potri.012G089900 ID=Potri.012G089900.1.v4.1 annot-version=v4.1 MSLLQWLKECSKPTLFVVTIFLVVVLKFLMKDKLKKRKLNLPPSPAKLPIIGNLHQLGNMPHISLRGLAKKYGPIIFLQLGEIPTVVISSAGLAKEVLKT HDLVLSSRPQLFSAKHLLYGCTDIAFAPYGAYWRNIRKICILELLSAKRVRSYSYVREEEVARLIRRIAESYPGITNLSSMIALYANDVLCRVALGRDFS GGGEYDRHGFQKMLDNFQALLGGFSLGDYFPSMEFVHSLTGMKSKLQYTFRRFDQFFDEVIAEHRNSKGKQEEKKDLVDVLLDIQKDGSSEIPLTMDNIK AVILDMFAGGTDTTFITLDWAMTELIMNPHVMEKAQAEVRSVVGDRRVVQESDLPRLNYMKAVIKEILRLHPAAPVLLPRESLEDVIIDGYNIPAKTRIY VNVWGMGRDPELWENPETFEPERFMGSGIDFKGQDFELIPFGAGRRSCPAITFGIATVEIALVQLLHSFDWKLPPGLEAKDIDNTEAFGVSLHRTVPLHV IAKPHFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.012G089900 [exp]	0	1	CYP71AP2v1
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	3.46	0.8282
					Potri.014G049100 [exp]	6.16	0.8438
					Potri.009G035950 [exp]	9.38	0.7753
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141600 [exp]	9.48	0.7503
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.009G044200 [exp]	13.26	0.8005
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	15.42	0.7633	NAC003,ATNAC2.1
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	19.44	0.7527
					Potri.005G130500 [exp]	21.67	0.7996
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	22.31	0.7925
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	25.03	0.7486

Compare expression of checked genes

Potri.012G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.