Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24770 310 / 4e-105 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 289 / 2e-97 CP31B chloroplast RNA-binding protein 31B (.1) AT2G37220 182 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60000 145 / 2e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 142 / 1e-39 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 123 / 2e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G53460 104 / 2e-25 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT2G35410 103 / 3e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 93 / 4e-23 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G01080 94 / 9e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086500 [exp] 456 / 1e-162 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 289 / 2e-97 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 193 / 8e-60 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 160 / 5e-47 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 156 / 2e-45 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G127200 [exp] 151 / 1e-43 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G202000 [exp] 145 / 4e-41 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 142 / 1e-39 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 118 / 2e-31 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017962 [exp] 263 / 9e-87 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10041952 [exp] 264 / 2e-86 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10002222 [exp] 197 / 3e-61 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 196 / 7e-61 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 187 / 2e-57 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 160 / 1e-44 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10029372 [exp] 147 / 1e-41 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023723 [exp] 144 / 2e-40 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016174 [exp] 144 / 2e-40 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10035678 [exp] 111 / 4e-28 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.012G090200.1 pacid=42782732 polypeptide=Potri.012G090200.1.p locus=Potri.012G090200 ID=Potri.012G090200.1.v4.1 annot-version=v4.1 ATGTCTGCTGCATCTGCTTTCACCTTCAAGCCCCTCTTAATGGCAGAAACATGCCTCTGTTCACTCCCTTCGACTTTCGCTTCGAAACCCCCACTTAAAT CTCTCCCTATTTCACAAAGACCCAGCAAGCTCCAACTCTCATACTCCCACTCTTTATCACCTTTCTCTCTAAAACCCAAAACCCATCTCTCCTTAACAAT CCCGTTTGTAACTCAGACCTCGGATTGGGCTCAACAAGGAGAAGAAGACAACACCACTATCACTTTAACTGAATCGGAGCAAGAAGAACAAGGAGAATCC AATTGGGTAAATGAAGAAAGTAATGATTTTGAAGGTAAAGTACCTGAATGGGAGGCTGAAGGAGAGGATGCAGCTGCTACCGAAGCTATTAGAGGTGAAG GAGAGAGTGGTGACGAGGAGGGATTTGTAGAGCCACCAGAGGAAGCTAAGATTTTTGTAGGGAACTTGCCATATGATGTTGACAGTGAGAAGTTGGCTAT GTTGTTTGAACAAGCTGGAACTGTTGAGATTGCTGAGGTTATTTACAACAGGGAAACTGATACAAGTCGTGGGTTTGGGTTTGTGACGATGAGTACTGTT GAAGAATCCGAAAAGGCTGTGGAAATGCTTCATCGTTATGATTTAGATGGAAGGTTTCTGACTGTAAATAAGGCTGCTCCTAGAGGATCAAGGCCTGAGC GCCCTCCTCGTGTGTCTGAACCTGGTTATAGAATCTATGTGGGCAACCTACCATGGGATGTGGATAGTGGTCGCCTGGAGCAAATTTTTAGCGAGCATGG TAAAGTAGTGAGTGCTCGGGTGGTTTTTGACAGGGAGACTAACCGTTCACGTGGTTTTGGCTTTGTAACTATGTCCACAGAGAGCGAGTTGAATGATGCC ATAGCTGCACTTGATGGACAGAATCTGGATGGGAGACCAATCAGAGTAAATGTTGCTGAAGAAAGACCAAGGCGCACCTTTTGA
AA sequence Show only first row Show all	>Potri.012G090200.1 pacid=42782732 polypeptide=Potri.012G090200.1.p locus=Potri.012G090200 ID=Potri.012G090200.1.v4.1 annot-version=v4.1 MSAASAFTFKPLLMAETCLCSLPSTFASKPPLKSLPISQRPSKLQLSYSHSLSPFSLKPKTHLSLTIPFVTQTSDWAQQGEEDNTTITLTESEQEEQGES NWVNEESNDFEGKVPEWEAEGEDAAATEAIRGEGESGDEEGFVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTV EESEKAVEMLHRYDLDGRFLTVNKAAPRGSRPERPPRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDA IAALDGQNLDGRPIRVNVAEERPRRTF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	0	1
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	1.41	0.9906	RBP29.1
AT3G44620			protein tyrosine phosphatases;...		Potri.009G146800 [exp]	2.44	0.9844
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	3.46	0.9854
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	3.87	0.9831	Pt-RPL1.1
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	4.47	0.9841
AT3G04550			unknown protein		Potri.013G044900 [exp]	4.89	0.9802
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Potri.017G007300 [exp]	5.74	0.9802
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	6.00	0.9811
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	7.34	0.9827
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	7.74	0.9811

Compare expression of checked genes

Potri.012G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.