Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48330 380 / 5e-134 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2) AT5G50240 365 / 3e-127 PIMT2, AtPIMT2 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086600 [exp] 499 / 3e-179 AT3G48330 374 / 8e-131 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017776 [exp] 413 / 4e-146 AT5G50240 372 / 4e-130 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3) Lus10033049 [exp] 392 / 8e-139 AT5G50240 365 / 1e-128 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.012G090300.1 pacid=42782775 polypeptide=Potri.012G090300.1.p locus=Potri.012G090300 ID=Potri.012G090300.1.v4.1 annot-version=v4.1 ATGCCCATGCTTCTTATGCTTATGCCTATGTCTCTATCCCTCCCAGCAGGAGTAATAGCGTATGGTTTCCGCAATTGTTCGCCCCCTCTTAAGCGTCTTT TAGCCCACAGTAACACCACCAACCTTCACCATTACCATCATCTTCGCCGTCGTAACAACACTATTCCACCTCAACTTAACACTCTCTTCTCTTTTAATTT TTTCCCAAGGAACCTTAATTGTCTTCTCACGGGTAATTCTCTCTTTTTCAGGATGGAGCGATTCTGGTCTGGAAGTAGCATCAATAAAAATAAAGCATTG GTGGAGCAATTGCAGAATTATGGAACGATCAGTTCTAAAAAGGTCTCTGAAGTAATGGAAACAATTGACAGGGCTTTGTTTGTCCCAGATGGTACCCCTG CTTATGTTGACAGTCCCATTGCAATAGGTTACAATGCCACCATTTCTGCTCCTCATATGCATGCAACTTGCCTGCAGTTGTTGGAGGAGAATTTGAAGTC TGGCATGCATGTCCTGGATGTTGGCTCAGGGACTGGGTACTTGACAGCATGCTTTGCTCTGATGGTTGGACCACAAGGTCGTGCTGTTGGTGTAGAACAT ATTCCAGAGCTGGCTGGTTCTTCCATAAAGAATATCAAGAAAAGCGCAGCAGCTCCATTGTTGAAAGAAGGTTCCCTCTCAATTCATGTTGGTGATGGAA GACAAGGTTGGCCAGAGTTTGCTCCATATGATGCCATTCATGTTGGGGCAGCAGCGCCAGAAATCCCACAGCCACTTCTTGATCAGTTGAAACCTGGTGG CAGGATGGTGATTCCGGTTGGTAACATATTCCAGGATTTGAAGGTGATTGACAAGAATGAGGATGGTTCCATTAGTGTTCGTAGTGAAACTTCTGTCCGT TATGTCCCTTTAACAAGTAGAGATGCCCAATTGCGGGGTTATTAG
AA sequence Show only first row Show all	>Potri.012G090300.1 pacid=42782775 polypeptide=Potri.012G090300.1.p locus=Potri.012G090300 ID=Potri.012G090300.1.v4.1 annot-version=v4.1 MPMLLMLMPMSLSLPAGVIAYGFRNCSPPLKRLLAHSNTTNLHHYHHLRRRNNTIPPQLNTLFSFNFFPRNLNCLLTGNSLFFRMERFWSGSSINKNKAL VEQLQNYGTISSKKVSEVMETIDRALFVPDGTPAYVDSPIAIGYNATISAPHMHATCLQLLEENLKSGMHVLDVGSGTGYLTACFALMVGPQGRAVGVEH IPELAGSSIKNIKKSAAAPLLKEGSLSIHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLLDQLKPGGRMVIPVGNIFQDLKVIDKNEDGSISVRSETSVR YVPLTSRDAQLRGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.012G090300 [exp]	0	1
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	2.00	0.8348
AT1G29810			Transcriptional coactivator/pt...		Potri.001G352800 [exp]	2.23	0.8363
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	2.82	0.7997
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Potri.008G203400 [exp]	8.48	0.7722
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Potri.004G152800 [exp]	10.67	0.8051
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.002G228800 [exp]	11.22	0.8295
AT1G36380			unknown protein		Potri.002G090100 [exp]	13.41	0.8101
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	13.67	0.7732
AT5G01350			unknown protein		Potri.006G101901 [exp]	16.00	0.8134
AT4G08230			glycine-rich protein (.1.2)		Potri.005G174700 [exp]	17.02	0.7967

Compare expression of checked genes

Potri.012G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.