Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 349 / 1e-109 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 294 / 5e-88 SEOa sieve element occlusion a, unknown protein AT1G67790 120 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050300 [exp] 489 / 1e-163 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 485 / 2e-162 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 485 / 4e-162 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 464 / 1e-153 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 463 / 2e-153 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 457 / 3e-151 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 456 / 1e-150 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 452 / 3e-149 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 448 / 4e-148 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017777 [exp] 508 / 2e-171 AT3G01680 493 / 3e-165 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 501 / 2e-168 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 492 / 8e-165 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 468 / 2e-154 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 445 / 2e-146 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 444 / 4e-146 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 436 / 5e-143 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 436 / 1e-142 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 429 / 2e-141 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 424 / 4e-138 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14576 [poplar] [flax] SEO_N Sieve element occlusion N-terminus PF14577 [poplar] [flax] SEO_C Sieve element occlusion C-terminus
Representative CDS sequence Show only first row Show all	>Potri.012G090400.2 pacid=42784021 polypeptide=Potri.012G090400.2.p locus=Potri.012G090400 ID=Potri.012G090400.2.v4.1 annot-version=v4.1 ATGGCCTCAAACAGCATGCAGATCACTCCTGCAATGAACCAAGTGATTCCTAATGAACTTTGGGTCTCCTTGGAATCTAATGGTAGCACAATGATGAAGG CCGTCAGGGCAAGCCATGCTCCTGATGGTCGCAAAGTTGATGTCAAGCCGATGCTCCGTATCATCGACAACATTTTGCTTAGGGCTGCTCCTGCCATCGT AGAGGGTACATATGAAGATAAAGGTCTTCTGGAGGAGGAAATATTCAGTCGGTCTGATGTGGATGCCAAGCTTAAAACTCTTGCTTCTATTATTAAAAAA GTCTCCTCTGAGCTCTTTTCCCACAACAACTTGATCCTCTCAGGAACATTCAAGGCGAACAGCAATGTCAATCAGACCATTATTCCCTATGGAATGGATT GCAAGTGTACGTGCTCGGGTGGCAGAGATGTGCATGCAACGATTATGATGTTACTCGACACCCTCTCAAGCTATTCGTGGGATGCCAAAGTAGTGCTAAC TGTAGCTGCTTTTATAGTGAACTACGGTCACGAATTCCTTCTATTCACATCATCTGAAGCTAAAAATTCAGCACTTGCTCAGTCTTTAGCATTCCTTAAG CAACTTCGAGACATTACTGACCATGCTAAGTTCTCAAAAGCTAAAATCGATGCAATTACTAAACTTATCAAGGGCATCATGGCTGTAACCAAGTACATTG TCGAATTGCATAATCTACCCCCTGAGTCCATTGCAACTGACGAGGCACCAATGTCAAATGCCATGGCTTACATCCCCAAAGCTGCCTACTGGACAATGCT TAGTGTTGTGATCTGTGCCTCGTATATTGCTAGTCTCAGCGGGTCTGAGGAAACCACGGAATTATTAGATCTCTCAAGACTGGCTAGTGAAGGCAGCAAA ATGCTGGTGATCCTGAAGAGCTACAAAACTATTTACAAGGAGTACGAAGATGAGAAATGTAAAACAGCTTACTGGGATCTCGTCAAAACTTTCTCCTCAA CTCACTCGGACAACATGACGGTTCTCAAAACCTTGCTTTTAGCCAAGGATGGCAAGCAACACCTCGTGGGTCACACCAGTAAGAGAATTCACATTGAGGA ATTAAGGGAAAAGCATGTGTTCCTGCTCGCATCTGGCCTTGATATCTCAAAAGAAGAGATTGATATCCTTGGTAAGTTGTACCAAGAGGCTAAATCCAAG GGAGAGGTTCAATATGAAGTAGTGTGGATCCCAGTTGTGGAAAAGACAATCTCTTGGGACCAAGAGAAACAGCAAAAATTTGAGCAGATACTAGCCATGA TGCCCTGGTACGCTATGCCTGAACCTTCAAAGATCAAAGCAGAGGTCATCAAGTACATAAAAAATGAGTGGCGTTTCGAGAACAAGATGATTTTGATGCC GCTAGATAGACAAGGAAAGGTGGGGTCCTTGAATGCCCTTGACATGCTTCTGGTACGGGGAAACAAGGCTTTCTCTTCCATCTATAATGAAAAAGAGGAA TCAATATGGGAGGCTCAACAGACTTGGACGCTTGAGCTACTTCTAGGCGGCATTGATAACAATTTCTCCCTCGTACTTGACTGGACGAAACAAGGTACGA TCGTGTGCTTGTATGGAGGAGAAGATATTGAGTGGATCAGGGAGTTCACGAAAGCAACAAAAGATGCTGTAAAGAACATCAGTTCTGGCACCAGCTTTGA GTTAGTCTATGTGGGCAAGAACAATGCAATCAAGGAAGTGGAAAATATCATCAAAACCATTGACGATGAGAATCTTAGTCGCTATTGGAACGACTTATCT TCCATTTGGTTCTTTTGGACCCGATTGGAGAGCATGCTCTACTTGAAAATGCAACAATGCAAGAACTTAAAAAATGACCGTATAATGCAAGAGGTCACAA CTTTGCTCAGCTATGATGACAGTGACAGAGGATGGGCTCTCTTTTGTAAAGGTTCTGAAATGGCCTTGGCACAGGGAGATGTAGCTCTGAAGAGCATGAA AGAGTTCAGTACTGAGAGGAAAGATGCTGATCTTTTCCAGGCAGTAAGCAATTACATCAAAAAATCACAGAAGATACAACGTTGCAGCCGCATTATCCTC TCAGGGGACAGGCAGGAAATCCCAAGCAAGAAGCTAAGTTCGGACGGATGTGAGTGTTCCATGGAGAAGTGCTTCGTGTATCGTTGCTGCGCGGATAAAT AG
AA sequence Show only first row Show all	>Potri.012G090400.2 pacid=42784021 polypeptide=Potri.012G090400.2.p locus=Potri.012G090400 ID=Potri.012G090400.2.v4.1 annot-version=v4.1 MASNSMQITPAMNQVIPNELWVSLESNGSTMMKAVRASHAPDGRKVDVKPMLRIIDNILLRAAPAIVEGTYEDKGLLEEEIFSRSDVDAKLKTLASIIKK VSSELFSHNNLILSGTFKANSNVNQTIIPYGMDCKCTCSGGRDVHATIMMLLDTLSSYSWDAKVVLTVAAFIVNYGHEFLLFTSSEAKNSALAQSLAFLK QLRDITDHAKFSKAKIDAITKLIKGIMAVTKYIVELHNLPPESIATDEAPMSNAMAYIPKAAYWTMLSVVICASYIASLSGSEETTELLDLSRLASEGSK MLVILKSYKTIYKEYEDEKCKTAYWDLVKTFSSTHSDNMTVLKTLLLAKDGKQHLVGHTSKRIHIEELREKHVFLLASGLDISKEEIDILGKLYQEAKSK GEVQYEVVWIPVVEKTISWDQEKQQKFEQILAMMPWYAMPEPSKIKAEVIKYIKNEWRFENKMILMPLDRQGKVGSLNALDMLLVRGNKAFSSIYNEKEE SIWEAQQTWTLELLLGGIDNNFSLVLDWTKQGTIVCLYGGEDIEWIREFTKATKDAVKNISSGTSFELVYVGKNNAIKEVENIIKTIDDENLSRYWNDLS SIWFFWTRLESMLYLKMQQCKNLKNDRIMQEVTTLLSYDDSDRGWALFCKGSEMALAQGDVALKSMKEFSTERKDADLFQAVSNYIKKSQKIQRCSRIIL SGDRQEIPSKKLSSDGCECSMEKCFVYRCCADK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	1.00	0.9881
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	2.44	0.9788
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	3.46	0.9706
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	4.12	0.9447
AT4G03500			Ankyrin repeat family protein ...		Potri.011G016100 [exp]	5.29	0.9640
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	6.63	0.9494
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	6.70	0.9631
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	6.92	0.9450
AT4G37445			unknown protein		Potri.007G051200 [exp]	6.92	0.9569
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	9.16	0.9587

Compare expression of checked genes

Potri.012G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.