Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 784 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 241 / 2e-68 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G31420 231 / 1e-67 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT4G39400 226 / 7e-63 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 223 / 2e-62 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G55610 221 / 2e-61 BRL1 BRI1 like (.1.2) AT1G72180 219 / 3e-61 Leucine-rich receptor-like protein kinase family protein (.1) AT1G78530 201 / 1e-58 Protein kinase superfamily protein (.1) AT3G13380 211 / 9e-58 BRL3 BRI1-like 3 (.1) AT1G17750 209 / 2e-57 AtPEPR2 PEP1 receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086800 [exp] 1019 / 0 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 251 / 5e-72 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.007G078100 [exp] 242 / 2e-68 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 236 / 1e-66 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G111700 [exp] 235 / 2e-66 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G198000 [exp] 233 / 1e-65 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G126100 [exp] 227 / 1e-63 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G163300 [exp] 214 / 3e-63 AT5G13290 484 / 3e-171 SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) Potri.002G063300 [exp] 225 / 9e-63 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013675 [exp] 807 / 0 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 803 / 0 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 755 / 0 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10017963 [exp] 753 / 0 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10025943 [exp] 238 / 1e-67 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10038382 [exp] 224 / 4e-65 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036672 [exp] 223 / 2e-64 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 220 / 2e-63 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 226 / 4e-63 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10011576 [exp] 222 / 2e-62 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G090500.1 pacid=42784144 polypeptide=Potri.012G090500.1.p locus=Potri.012G090500 ID=Potri.012G090500.1.v4.1 annot-version=v4.1 ATGGCCGTCCTTCACCACAAACACCACCTCTCCATCTTCGTTCTCCTATCTGTCCTCCTCCTCGCTGATGCAAGATTGAACCTTGACCATTCGGACCTCA AAGCCTTCTCAACCATCCAAAAAGACTTGGGCATCAGCAGTCAACGAAGCTCCTCCTCTACACCATGCAACACCCCTGGGGTGTTTTGTGAGAGGAGGCT CTCTCCCAACAGCACCTTTGTGCTCAAAATCACAAGACTCGTCTTCAAGTCTCAACGGCTCGCAGGGTTCTTGTCTCCGGCAATTGGACGGCTGTCTGAG CTCAAGGAACTTTCACTAACCAACAACCAGCTCGTTGACCAGGTCCCTGCCCAAATAGTCAAGTGCAAGAAACTAGAGATTCTTGAGCTTGCAAACAACC AGTTTTCCGGTGAAATTCCCTCTGAATTATCATCACTTGTCCGTCTTCGAGTTCTTGATCTCTCGAGCAATGAATTTTCTGGGAATTTGAGTTTCTTAAA GCACTTCCCCAACCTGGAAAGTCTTTCTCTTGCAAATAATCTCTTCACTGGAAAGGTTCCAAAGTCTATACGTTCATTTCGCAATCTCCAATTCTTCGAC TTCTCAGGAAACAGTTTTCTTGAAGGACCTGTGCCAGTGATTGGCAAAGGTGAATCCTCAAGGCCCCAATACCCAAAACGTTACATATTGAAGGAGAATA CAACAAGTACAGGATCAAAGAATAAGTCTTCTGGACTTGCTCCAGCTCCTGCACCATCATCATCAGCACCAGCACCATCAGCACCACACAAGCACAAGAA TAGCAAAAGAAAGCTTGCCGGGTGGCTCCTTGGATTTCTTGCTGGCTCAGTAGCTGGGAGTTTATCTGGGTTCGTGTTCTCATTATTGTTTAAGATTGTA TTGGCAGCAGTAAAAGGTGGAGGGAGAGATGTAGGCCCTGCAATCTTCAGTCCATTGATCAAGAAAGCAGAGGATTTAGCTTTCTTGGAAAAAGATGAGG GGCTTGCAAACTTAGAAATCATCGGGAGAGGTGGATGTGGAGAAGTATTCAAAGCTGAATTGCCTGGAAGTAATGGAAAAATGATTGCTGTAAAGAAGAT AATTCAACCTCCAAAAGATGCTGCCGAGTTATCTGAAGAAGATAGCAAGGTTTTAAACAAGAAAATGAGACAAATTCAATCAGAGATCAATACCGTCGGC CACATTCGGCATCGAAACCTTCTTCCTCTTCTAGCTCACGTGTCTCGTCCTGATTGTCATTATCTTGTCTACGAATTCATGAAAAATGGTAGTCTACAAG ATGTGTTGAACCAAGTTACTGAAGGGAAAAGAGAATTGGACTGGTTAGCTCGCCACAAAATTGCAGTAGGAGTGGCATCTGGGCTTGAGTACCTTCACTT GAGTCATAGTCCACAGATTATCCATAGAGATCTCAAGCCCGCAAATGTACTTCTTGACGACGACATGGAAGCTAGAATTGCCGATTTTGGACTCGCTAAA GCAATGCCGGATGCTAAAACACACATCACAACTTCTAATGTTGCTGGAACAGTGGGATACATAGCACCAGAGTATCACCAAACACTCAAATTCACAGAAA AGTGTGACATTTACAGTTTTGGTGTGGTACTTGGGGTGTTGGTGATGGGAAAGCTTCCATCTGATGCGTTCTTTCAAAGTACTCGTGAATTAAGTTTAGT TAAGTGGATGAGAAATATTATGATATCAGAGAATCCAAGTCAAGCTATTGATCCAAAGCTGATAGGCCATGGGCTAGAGGAGCAAATGCTGCTAGTTCTT AAAATTGCTTGCTTCTGCACTATCGATGACCCAAAACAGAGGCCTAGCAGTAAGGATGTTCGGTGCATGCTGTCACAAATCAAACACTAG
AA sequence Show only first row Show all	>Potri.012G090500.1 pacid=42784144 polypeptide=Potri.012G090500.1.p locus=Potri.012G090500 ID=Potri.012G090500.1.v4.1 annot-version=v4.1 MAVLHHKHHLSIFVLLSVLLLADARLNLDHSDLKAFSTIQKDLGISSQRSSSSTPCNTPGVFCERRLSPNSTFVLKITRLVFKSQRLAGFLSPAIGRLSE LKELSLTNNQLVDQVPAQIVKCKKLEILELANNQFSGEIPSELSSLVRLRVLDLSSNEFSGNLSFLKHFPNLESLSLANNLFTGKVPKSIRSFRNLQFFD FSGNSFLEGPVPVIGKGESSRPQYPKRYILKENTTSTGSKNKSSGLAPAPAPSSSAPAPSAPHKHKNSKRKLAGWLLGFLAGSVAGSLSGFVFSLLFKIV LAAVKGGGRDVGPAIFSPLIKKAEDLAFLEKDEGLANLEIIGRGGCGEVFKAELPGSNGKMIAVKKIIQPPKDAAELSEEDSKVLNKKMRQIQSEINTVG HIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDVLNQVTEGKRELDWLARHKIAVGVASGLEYLHLSHSPQIIHRDLKPANVLLDDDMEARIADFGLAK AMPDAKTHITTSNVAGTVGYIAPEYHQTLKFTEKCDIYSFGVVLGVLVMGKLPSDAFFQSTRELSLVKWMRNIMISENPSQAIDPKLIGHGLEEQMLLVL KIACFCTIDDPKQRPSSKDVRCMLSQIKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	0	1
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	2.44	0.9851
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	2.82	0.9818
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028600 [exp]	3.00	0.9810
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	3.16	0.9854
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G148000 [exp]	3.46	0.9851
AT1G76360			Protein kinase superfamily pro...		Potri.002G009400 [exp]	4.35	0.9704
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	5.00	0.9840
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	5.91	0.9835
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	6.00	0.9767
					Potri.017G111150 [exp]	7.07	0.9784

Compare expression of checked genes

Potri.012G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.