Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24760 548 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 517 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 509 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 420 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 392 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 369 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 343 / 1e-117 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 343 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 322 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 300 / 3e-99 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087100 [exp] 668 / 0 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 588 / 0 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 438 / 5e-154 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 437 / 2e-153 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 435 / 1e-152 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 421 / 8e-147 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 410 / 1e-143 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 404 / 6e-141 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 343 / 5e-118 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042075 [exp] 569 / 0 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 568 / 0 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022307 [exp] 539 / 0 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000544 [exp] 504 / 4e-180 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 431 / 7e-151 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 424 / 2e-148 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033575 [exp] 397 / 4e-138 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 394 / 5e-137 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 364 / 1e-124 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028497 [exp] 355 / 5e-122 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.012G090800.1 pacid=42783106 polypeptide=Potri.012G090800.1.p locus=Potri.012G090800 ID=Potri.012G090800.1.v4.1 annot-version=v4.1 ATGGGAGGGGTGACTTCATCAATGGCTGCAAAATTAGCATTTTTTCCTCCAAACCCACCATCATACAAGCTAGTTACAGATGATGCCACTGGTCTTTTAC TTCTAGACCACTTCCCTCACCGGGAAAACGTTGATATCTTGCGTCTACCAACTCGGCGAGGGACTGAGATTGTTGCTGTTCATGTTAGGTACCCAATGGC AACTTCTACTTTGCTATACTCCCATGGAAATGCAGCTGATATTGGTCAGATGTATGAGCTCTTCATCGAATTGAGTATTCATTTGCGGGTTAATCTCATG GGGTACGACTACTCTGGCTATGGACAGTCATCAGGAAAGCCCAGTGAACAAAATACATATGCAGATATTGAAGCTGCTTACAAGTGTCTTGAAGAGAGCT ATGGTGCCAAGCAGGAAAATATCATCCTTTATGGCCAATCTGTTGGAAGTGGCCCCACTGTGGATCTTGCTGCGCGTTTACCTCGACTAAAAGCTGTTGT ATTGCATAGTCCTATACTATCAGGGTTAAGAGTGATGTATTCTGTGAAGCGCACATACTGGTTTGACATCTACAAGAATATAGACAAAATTCCACTGGTG AAGTGTCCTGTGCTGGTAATCCATGGAACTGCTGATGAAGTGGTTGACTGTTCTCATGGCAAGCAACTTTGGGAGCTGTGCCAAGAGAAATATGAACCTC TATGGCTCAAAGGAGGTAATCACTGTAATTTGGAGCTGTATCCAGAGTATCTTAGGCATCTAAAGAAGTTTATAACGACAGTGGAGAAATCCCCGTCTGG AAGAAGTTCCGGTAGGAGAAGTGTAGATGGGTTTGAACAGGCCAGACGAAGCACCGATTGTTTTGAGGCCCCGAGGAAGAGTACTGACCGGAGGGAGAAG CCGAGGAAGAGCACTGATAGGACTGAAAAAATGAAATTTCACGAATTCAAGTTTACACACACAGACAAGCTAGAAAAGTTAAAGGTCTCCTTTGAGCACA TGGAGAGATCACGGAGAAGCGTGGAATATTATGATAAATCTAGAAAAAGTGTCGACGTACAGGTAGAGAAAGCACGGAAGAGTGTCGACTGGTTGGAGAG AATTCGGTAA
AA sequence Show only first row Show all	>Potri.012G090800.1 pacid=42783106 polypeptide=Potri.012G090800.1.p locus=Potri.012G090800 ID=Potri.012G090800.1.v4.1 annot-version=v4.1 MGGVTSSMAAKLAFFPPNPPSYKLVTDDATGLLLLDHFPHRENVDILRLPTRRGTEIVAVHVRYPMATSTLLYSHGNAADIGQMYELFIELSIHLRVNLM GYDYSGYGQSSGKPSEQNTYADIEAAYKCLEESYGAKQENIILYGQSVGSGPTVDLAARLPRLKAVVLHSPILSGLRVMYSVKRTYWFDIYKNIDKIPLV KCPVLVIHGTADEVVDCSHGKQLWELCQEKYEPLWLKGGNHCNLELYPEYLRHLKKFITTVEKSPSGRSSGRRSVDGFEQARRSTDCFEAPRKSTDRREK PRKSTDRTEKMKFHEFKFTHTDKLEKLKVSFEHMERSRRSVEYYDKSRKSVDVQVEKARKSVDWLERIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	0	1
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	2.64	0.9298
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.003G107600 [exp]	3.74	0.9276
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	4.89	0.9112
AT3G11590			unknown protein		Potri.016G074300 [exp]	5.29	0.9108
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	6.92	0.9085
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	7.41	0.8605
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	7.74	0.9086
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	10.24	0.9066
AT2G42040			unknown protein		Potri.006G193500 [exp]	10.24	0.8855
AT2G27740			Family of unknown function (DU...		Potri.004G186900 [exp]	10.95	0.8732

Compare expression of checked genes

Potri.012G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.