Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PMSR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61640 251 / 9e-86 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT4G25130 245 / 2e-82 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07470 237 / 5e-80 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G07460 233 / 2e-78 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 112 / 1e-30 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087600 [exp] 337 / 4e-120 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.015G112268 [exp] 245 / 2e-82 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.012G115800 [exp] 243 / 6e-82 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.007G012900 [exp] 115 / 6e-32 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033039 [exp] 303 / 1e-106 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10043002 [exp] 252 / 3e-85 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10032504 [exp] 251 / 1e-84 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10013673 [exp] 223 / 5e-75 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10041922 [exp] 114 / 3e-31 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 112 / 1e-30 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10019755 [exp] 96 / 6e-23 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [poplar] [flax] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Potri.012G091100.2 pacid=42782933 polypeptide=Potri.012G091100.2.p locus=Potri.012G091100 ID=Potri.012G091100.2.v4.1 annot-version=v4.1 ATGGCAACCCACACCACCAATCCTGCTCTGGATCCGGATCTAGACAAACCAGACAACCCCAATCACGAGTTTGCTCAATTCGGAGCTGGATGTTTCTGGG GTGTCGAGCTTGCCTTTCAGAGATTACATGGTGTGGTCAAAACTGAAGTAGGCTACTCTCAGGGTAACGTCCCTGATCCGACTTACAAACTTGTATGCAC CAAAACCACCAACCACGTTGAGGTTGTCCGGGTCCAATTTGACCCTGAAGTTTGCCCATATACCAACCTCCTCTCTCTTTTCTGGTCTCGCCATGATCCC ACCACCCTCAATCGTCAGGGTGGCGATGTGGGTACACAGTATAGATCAGGGATATACTACTACAACGAGGCTCAAGCTAAGTTAGCCCAGGAATCAAAGG AAGCTAAACAGTTGGGATTGAAGGATAACACGGTTGTGACGGAAATCCTGCCAGCAAAGAGATTTTATAGAGCTGAGGAGTACCATCAGAAGTATCTGGA AAAAGGTGGGGGTCGAAGCGCTAAACAGTCTGCTGAAAAAGGTTGCAATGACCCTATTAGATGCTATGGTTAA
AA sequence Show only first row Show all	>Potri.012G091100.2 pacid=42782933 polypeptide=Potri.012G091100.2.p locus=Potri.012G091100 ID=Potri.012G091100.2.v4.1 annot-version=v4.1 MATHTTNPALDPDLDKPDNPNHEFAQFGAGCFWGVELAFQRLHGVVKTEVGYSQGNVPDPTYKLVCTKTTNHVEVVRVQFDPEVCPYTNLLSLFWSRHDP TTLNRQGGDVGTQYRSGIYYYNEAQAKLAQESKEAKQLGLKDNTVVTEILPAKRFYRAEEYHQKYLEKGGGRSAKQSAEKGCNDPIRCYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Potri.012G091100 [exp]	0	1	Pt-PMSR1.2
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	6.00	0.9188
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	6.16	0.9197
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	8.48	0.9171
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	10.58	0.9144
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	14.69	0.9114
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108800 [exp]	16.88	0.9168
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	19.07	0.9021
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	20.37	0.8539
AT5G61820			unknown protein		Potri.015G108500 [exp]	20.44	0.9083
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	20.61	0.8943

Compare expression of checked genes

Potri.012G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.