Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63160 403 / 2e-140 BT1 BTB and TAZ domain protein 1 (.1) AT3G48360 399 / 8e-139 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT5G67480 266 / 2e-86 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT1G05690 240 / 2e-76 BT3 BTB and TAZ domain protein 3 (.1) AT4G37610 239 / 4e-76 BT5 BTB and TAZ domain protein 5 (.1) AT3G56230 63 / 5e-11 BTB/POZ domain-containing protein (.1) AT1G55760 56 / 1e-08 BTB/POZ domain-containing protein (.1) AT4G08455 55 / 2e-08 BTB/POZ domain-containing protein (.1) AT3G06190 52 / 5e-07 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 50 / 2e-06 ATBPM1 BTB-POZ and MATH domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087700 [exp] 638 / 0 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.007G140400 [exp] 281 / 4e-92 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.017G009700 [exp] 278 / 5e-91 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 249 / 2e-79 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.005G183600 [exp] 63 / 4e-11 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 59 / 7e-10 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 57 / 5e-09 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.007G003400 [exp] 51 / 1e-06 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 51 / 1e-06 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018087 [exp] 479 / 1e-170 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 478 / 4e-170 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10042082 [exp] 471 / 2e-167 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10019299 [exp] 285 / 1e-93 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 275 / 7e-90 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10011523 [exp] 271 / 3e-88 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10033038 [exp] 233 / 1e-75 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10042763 [exp] 54 / 6e-08 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 53 / 1e-07 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10034780 [exp] 53 / 2e-07 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF02135 [poplar] [flax] zf-TAZ TAZ zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G091400.1 pacid=42783730 polypeptide=Potri.012G091400.1.p locus=Potri.012G091400 ID=Potri.012G091400.1.v4.1 annot-version=v4.1 ATGGAGGAAACTCATAACACCGCAACCGCTGCCACCCCTACCATCTCCGGCGAGCTCATGAGCAGTGATTTTCAATTCTCCTATCAGAATTCATTGCCTA AACCAGACGTCCAAATCCTCACTTCCAATGGCCTCCGCATCCCGGCTCACACTGGCATTCTCGCATCGGTGTCACCGGTACTGGAAAATATCATAGACAG GCCACATAAACACCATAGCTCCGAGAAGATCATCCCTATCCTCGGTGTTCCATGCGACGCCGTTTCCCTATTCATTCAATTCCTCTACTCCTCAAGGTGC AGCGAGGAGGAGTTGGAGAAGTATGGAATCCATCTACTGGCGTTGTCACACGTGTACTTGGTCCCACAGTTGAAGCACACGTGTTCAAAGGCTGTTGGTC ACCGTTTGACCGTTGAGAATGTGGTGGATGTACTCCAATTGGCTAGGCTCTGCGATTCACCGGATCTTTATGTCAAGTGCATGAAGATGTTGTCTGATAA TTTCAAGGCCGTAGAAAAGACAGAAGGGTGGAAGTTCATGCAGGAGAACGACCCTTTTCTTGAGCTCGAGATTCTCAGATTCATTGACGAAGCTGAATCG AGGAAGAAGAGAACAAGGAGGCACAGAGAGGAGCAGAGATTGTTCATGGAGCTAAGTGAAGCAATGGAGTGCTTAGAGCACATTTGCACAGAAGGGTGCA CAACCGTCGGTCCATGTGACCTGGGACCTAGCAATAAACGTCGGGGTCCGTGCAACAAGTTCTCCACATGCGAAGGTCTTCAGCTCTTGATCAAGCACTT CACCATGTGCAAGAATCGGGTTAATGGAAAATGCTCAAGGTGTAAGCGGATGGGGCAGCTCTTAAGACTACACTCATCAATCTGTGACCAAACTGATTCT TGCAGGGTTCCACTTTGCAGGCAATTCAAACTGAAAATGCAACGAGAGAGAAGAGGAGATGAAACCCTGTGGAGCTTATTGGTGAAGAAGGTTGCGTCTG CGAGGGTCATGTCTTCTCTATCTCTCCCCAAGAGGAAAAGAGAAGAACCGAGGGAGACAATACATGATCATGGTATTAGAAACTTCAGAAAGTAG
AA sequence Show only first row Show all	>Potri.012G091400.1 pacid=42783730 polypeptide=Potri.012G091400.1.p locus=Potri.012G091400 ID=Potri.012G091400.1.v4.1 annot-version=v4.1 MEETHNTATAATPTISGELMSSDFQFSYQNSLPKPDVQILTSNGLRIPAHTGILASVSPVLENIIDRPHKHHSSEKIIPILGVPCDAVSLFIQFLYSSRC SEEELEKYGIHLLALSHVYLVPQLKHTCSKAVGHRLTVENVVDVLQLARLCDSPDLYVKCMKMLSDNFKAVEKTEGWKFMQENDPFLELEILRFIDEAES RKKRTRRHREEQRLFMELSEAMECLEHICTEGCTTVGPCDLGPSNKRRGPCNKFSTCEGLQLLIKHFTMCKNRVNGKCSRCKRMGQLLRLHSSICDQTDS CRVPLCRQFKLKMQRERRGDETLWSLLVKKVASARVMSSLSLPKRKREEPRETIHDHGIRNFRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.012G091400 [exp]	0	1
AT5G53660	GRF	ATGRF7	growth-regulating factor 7 (.1...		Potri.015G006200 [exp]	22.71	0.7612
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Potri.003G170000 [exp]	53.54	0.6805
AT3G15395			unknown protein		Potri.006G225232 [exp]	109.86	0.6693
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	133.04	0.6486

Compare expression of checked genes

Potri.012G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.