Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24790 656 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 380 / 3e-114 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 376 / 9e-114 AAA-type ATPase family protein (.1) AT5G45720 317 / 4e-93 AAA-type ATPase family protein (.1.2) AT4G18820 305 / 6e-88 AAA-type ATPase family protein (.1) AT1G21690 71 / 8e-13 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 52 / 1e-06 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088100 [exp] 1492 / 0 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G044900 [exp] 355 / 5e-105 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 351 / 1e-103 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 314 / 1e-90 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 311 / 6e-90 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.005G181300 [exp] 69 / 5e-12 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 56 / 9e-08 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.002G080100 [exp] 52 / 1e-06 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.011G023800 [exp] 46 / 0.0001 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033035 [exp] 947 / 0 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 946 / 0 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10042401 [exp] 367 / 3e-109 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10005422 [exp] 312 / 6e-91 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 306 / 7e-89 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 292 / 2e-83 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 288 / 2e-82 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10026270 [exp] 252 / 1e-69 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10028543 [exp] 60 / 5e-09 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 55 / 1e-07 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [poplar] [flax] post-AAA PF12169 [poplar] [flax] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [poplar] [flax] P-loop_NTPase PF13177 [poplar] [flax] DNA_pol3_delta2 DNA polymerase III, delta subunit
Representative CDS sequence Show only first row Show all	>Potri.012G091700.1 pacid=42783960 polypeptide=Potri.012G091700.1.p locus=Potri.012G091700 ID=Potri.012G091700.1.v4.1 annot-version=v4.1 ATGGCTGACGGGAGGCGACATTCAGTCGATATTCCCATAACAAGAACCCTCATAGCCCTCAGGAGAGTGAGGTCACTACGGGATCCATCAACCAATTCTA TGAGCAAATTCTCTGCTTTGCTGGAAAATGCCACCTGGGAAACAAATTCCACCAAAGAAATATCTATACAGTTTGCCGATGTTTCCAAAGAAGGTCGCTT GAATCACACTGGTCTTTCAGGATGGAAAAATTTAGGTCTTGATGAACACCGGGAGGAACAAGTTGATAATTTTGATTCGCAATATGATATGGGAAGGTCC GAGTTAATTTTCCGTGAGAGTTCTGGTGGAGTGAAAAGTATGGATGCTCCTCTTACGGCCGAAAAGGTTGAAGGGGATAATTATGAGAGAGAGGCTAGTG GAACTAAGTTGTTGAGTGAAGAATATTATGGCAGTCATAGGAACAAAGTGTTGGATTTGGTATGCACCACACCTTTGAGCAATCAACTGGTGGACCGGGA TTCAACTAGTGGACCCATTACAGGATCTCCACTAGGAAGTGACCACTCTGTTCCAAGACAAAAACCTCGATCCAAAAATCAAGTCAAGTCATACAGTGGG GTGGGTGACGTTTTGAGTCGTGCAGGTAGTCCATGCTTATCTGTCAGTGATGCTTTGTCCAGCCATAGCACGTCATTGTTTGCTAATGAAGAGACTGATT TCATGGTTCAAAATGACCGTGGATGTGGGATAAGCTGCTGCTGGACAAAAACCCCAAGACTCAGAGATTCAAATCCATATTCCGATGCAGAAGGCAATCC ATTATTGTCCAGAGATGTAGCTGAGACAACTCGTGGGAAGAGGAGCTGGAAGCACACTACAAATGAAACTCCTAGGAGTTTGAGTCAGAAATTTAGGCCA AAATCTTTTGATGAATTGGTGGGACAAAATGTAGTGGTAAGATCTCTTTTGGGTGCCATTTCTAAAGGAAGGATAACCTCTTTATATCTCTTCCATGGTC CTCGTGGCACAGGCAAGACCTCTGCCTCGAGGATATTTGCTGCTGCCCTGAATTGCCTCTCACATGAGTACAAACCATGTGGTGTCTGCCGAGAATGTGT TGCGTTCTTTTCTGGGAGGAGCCGGGATGTGAAAGAAGTTGACTCCATGAGAATTAATCGGGCCAAAGGGATTAGATCTCTTATAAAGAATGCATCAATG CCACCAATTTCATCACGTTTCAAAGTTTTCATTGTTGACGAGTGTCATTTGTTGCATGGAGAGACATGGGGAACTGTTTTGAATAGCCTAGAGAACCTGT CGCAAAATGTTGTCTTTGTGATGATCACTCCTGAACTTGATATGCTACCGAGAAGTGCAGTCTCTCGGTCTCAAAAATATCATTTTCCAAAGATAAAAGA TGCTGATATAGCCAGCAGATTGAGGAATATCTGTGTTGAAGAAGATCTTGACTTTGATCAGGTTGCTTTAGACTTCATTGCTGCTAAGTCAAGTGGTTCC CTTAGGGATGCTGAAATTATGCTTGATCAGTTGAGTTTGCTTGGTAAACGAATTACAATGTCCTTGGCCCATGAGCTTATTGGAGTGGTTTCTGATGATG AATTGTTTGATTTGCTGGATCTGGCTTTGTCATCTGACACGTCAAGCACTGTCATAAGAGCCAGGGAATTGATGAGGTCCAGGATTGATCCTATGCGACT TGTATCACAGCTGGCAAATCTCATAATGGATGTTCTTGCTGGAAAATGCCAAGATAATAGTTCTGAAGTCAGAAGAAAGTTTTCAAGGAAGCATGCTTCT GAAGGAGACATGCAGAGACTGAGTCATGCATTGAAAATACTATCTGAAAGTGAGAAGCAACTGAGGATGTCAAAAAACCAAAGTACATGGTTAACAGTAG CTCTTCTGCAGTTGAGCTCGCTGGAAGCCTCTCCCATGGATGTGAATGATTCAAAGTCTTCAATGAGAAATGGACATGACCGAGATGGGGACTTTTCGAG CACGCCATCCACCGGGGAGAGCTTGAAGCATCTTGTCCTGCATTCATGTGAAGACAGGAAGTCGGAAAGATTGCAAGTACAAGGGGATTGTAAAGTGACA TTGGATTCCATATGGAAGAGAGCTAGTGAATTATGCAAATCAAATTCACTCAGGAATTTTCTTAGGAAACAAGGGAAACTATCGTCTCTTCATTTTGATA AAGGTCTGGCAGTAGCTGAATTGGAATTCCATCATCCAAACTATGCATCCAAGGCTGAAAAGTCATGGAAGTTTATTGCAAGTTCACTGCAAACAGTTCT GGGTTGTAACGTTGAAATCCGGATCAATCTTGTAGTTTGTGCTCCTGTGTCAAAGTGTGCCAAACTAAGGAGGCTATCTTTTAGTTTGTTTGGTTGTTCT CGGATAACACGGCACAAGTCACATCCACCCATGGAATGTGGATGTGGAAGTGACTCCGACTACTCTGATCACATCTCTGAGAAGCCTATGATAAGGGAGA AAGCTATTTCAGCCTGTCCCTCTGATTGTGGATCTCAAATACCACACAGCTGTTATCACAGAGTGGAAGTAGGGAAGGCTTTAAGAAATAGTGAAGGTAA TGTGCTGAGCATAGGGCCAACCTCATCTCACAGATCACTGCCTAATGATACATCTAAAACACCTGGGTATGGGTTTCCTTCTTCAAAGGCTGGAGAAAGC GACCATGACTATACAATTTTCTCTGGTCAAGAGGCCGAGGATCAGCCGAACTGCTTTCCTAAAAGTCTTAGGCTGCCAAAGAAGTCACGTTCTTCAGAGA CTACTAAAGTGGTTCGTATTTGTACTCATCAAGAAAACAAGCTGGCATTGTCTATCCCTGGGAAGGAATCTGTTGAAAACATGCACCATTGCCAGTGA
AA sequence Show only first row Show all	>Potri.012G091700.1 pacid=42783960 polypeptide=Potri.012G091700.1.p locus=Potri.012G091700 ID=Potri.012G091700.1.v4.1 annot-version=v4.1 MADGRRHSVDIPITRTLIALRRVRSLRDPSTNSMSKFSALLENATWETNSTKEISIQFADVSKEGRLNHTGLSGWKNLGLDEHREEQVDNFDSQYDMGRS ELIFRESSGGVKSMDAPLTAEKVEGDNYEREASGTKLLSEEYYGSHRNKVLDLVCTTPLSNQLVDRDSTSGPITGSPLGSDHSVPRQKPRSKNQVKSYSG VGDVLSRAGSPCLSVSDALSSHSTSLFANEETDFMVQNDRGCGISCCWTKTPRLRDSNPYSDAEGNPLLSRDVAETTRGKRSWKHTTNETPRSLSQKFRP KSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAAALNCLSHEYKPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKNASM PPISSRFKVFIVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDADIASRLRNICVEEDLDFDQVALDFIAAKSSGS LRDAEIMLDQLSLLGKRITMSLAHELIGVVSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVLAGKCQDNSSEVRRKFSRKHAS EGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEASPMDVNDSKSSMRNGHDRDGDFSSTPSTGESLKHLVLHSCEDRKSERLQVQGDCKVT LDSIWKRASELCKSNSLRNFLRKQGKLSSLHFDKGLAVAELEFHHPNYASKAEKSWKFIASSLQTVLGCNVEIRINLVVCAPVSKCAKLRRLSFSLFGCS RITRHKSHPPMECGCGSDSDYSDHISEKPMIREKAISACPSDCGSQIPHSCYHRVEVGKALRNSEGNVLSIGPTSSHRSLPNDTSKTPGYGFPSSKAGES DHDYTIFSGQEAEDQPNCFPKSLRLPKKSRSSETTKVVRICTHQENKLALSIPGKESVENMHHCQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24790			AAA-type ATPase family protein...		Potri.012G091700 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.004G031500 [exp]	5.00	0.9630	PSBQ2.1
AT4G21780			unknown protein		Potri.011G136500 [exp]	8.48	0.9489
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	9.00	0.9470
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	9.00	0.9381
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	9.59	0.9432	2,Pt-LHCB2.1
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Potri.017G050900 [exp]	11.66	0.8991
AT2G03430			Ankyrin repeat family protein ...		Potri.010G185200 [exp]	12.00	0.9309
AT3G50280			HXXXD-type acyl-transferase fa...		Potri.003G057100 [exp]	16.30	0.9414
AT4G10340		LHCB5	light harvesting complex of ph...		Potri.019G063101 [exp]	19.13	0.9426
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124212 [exp]	20.49	0.9317

Compare expression of checked genes

Potri.012G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.