Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50280 846 / 0 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 187 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 182 / 2e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 178 / 6e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 176 / 1e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61990 177 / 5e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 171 / 4e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 171 / 1e-44 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G09900 168 / 4e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 169 / 8e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 187 / 3e-50 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 185 / 6e-50 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G250200 [exp] 181 / 3e-48 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 179 / 4e-48 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 179 / 9e-48 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 180 / 2e-47 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G010900 [exp] 176 / 1e-46 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 173 / 7e-46 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G249800 [exp] 172 / 6e-45 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042081 [exp] 676 / 0 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018086 [exp] 363 / 2e-120 AT5G50280 337 / 1e-110 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016009 [exp] 175 / 7e-46 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014245 [exp] 172 / 1e-45 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012268 [exp] 172 / 5e-45 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023863 [exp] 172 / 7e-45 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10003427 [exp] 162 / 9e-44 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013894 [exp] 168 / 3e-43 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 167 / 3e-43 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 167 / 7e-43 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G091800.1 pacid=42783415 polypeptide=Potri.012G091800.1.p locus=Potri.012G091800 ID=Potri.012G091800.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTCTCACAAATCAGGCCTCCCTCTCGTCTCCTCTCTTGTTTAACAATCCTCACCCTAATCCAAACTACTCAAAATCTCATCTTTCCA TTCTCTCTAAACCCTCAAGACAATCATTTTCTCTCTTAGCAACTTCTCACTCTTCACCTGCCATTTTCCTTCTTTTTCTTGAACATGAAAAACAAGAAGT TGAACACCTAAGCACAGCACAAACACAACAAGATGGTGACGGTGATGATGCTAATGTAGAGGACAAAGATGGTGTTGAAGAAGGGGAGGAGGAGGAGGAG GACTCTGTTGACCCAATTTTAAGATTCTTCAAGTCCCAGACTTCAACAACACATGACCCTCCTCGACAGGGCAAATTCTCTCTCAAGAAAAACAGACGCT CCTCATGGCGCCTAGCTCCTCAGTTTGATTCAGACACTCTAAATGAAGAAAGCCCACAAATAGTTACTTCAAATTCTGTTTCCAGGCTACCTGATAGAGT TGTAGGAGAAATATTGAAACTTGCAAGGGAGTTACCAAAGAATATGACTCTGGGAGAGATATTGGGTGGTTATGAAGGGAGGGTTAGTGCAAAAGAGAGT GTGGAAATATTGGGGTTGATGGGAGAGGAGGGTTTGTTAATGGGTTGTTTGTATTTTTATGAGTGGATGGGGTTGCAAGAACCGTCTTTAGTTACTGCTC GTGCTTGTACTATTTTGTTTCCGATATTGGGTAGAGCTGGAATGGGTGATAAGTTGGTGATTTTTTTAAGGAATTTGCCTCAACAGAAGGAGTTTCTAGA TGTTCATGTTTATAATTCCGCTATATCTGGTCTTCTCTGCTGTGGAAGGTATAATGACGCTTACGAGGTGTATGAGGCAATGGAAGCATATAATGTTTCT CCAGATCACGTGACATGTTGTATAATGATTACAGTCATGAGGAAAAAGGGCTGTACTGCAAAAGAGGCATGGGAATTCTTTGAGAGAATGACCAGGAAAG GAGTCAAATGGAGTCCAGAAGTTCTGGGTGCTCTAATAAAATCATTCTGTGACGAGGGACTGAAGAAGGAAGCCCTTATTATCCAGACAGAAATGGAGAG AAGAGGTATTTCTTCAAATGCTATCATCTACAACACATTGATGGACTCCTACAGCAAATCCAACCAAATTGAAGAAGCTGAAGGTCTTTATTCTGAGATG CAGGCAAAAGGCCTGAAGCCCACATCTGCTACCTTTAACATTCTTATGGATGCATACAGCAGAAGAATGCAGCCTGATATAATTGAGAAACTGCTGCTGG AAATGCAGGATGCAGGACTAGCACCTAATGCTAAATCCTATACATGCCTAATTAGTGCGTATGGAAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGC GTTCTTGAGGATGAAGAAAGCTGGGATAAAACCTACTTCATATTCATATACTGCTCTTATCCATGCTTATTCAGTTAGTGGCTGGCATGAAAAAGCTTAT ATAACGTTTGAGAATATGCAAAGAGAAGGAATCAAACCATCAATTGAAACTTACACAACCCTTCTTGATGCATTCAGGCGTGCTGGTGATACAAAAACAT TAATGGACATTTGGAAATTGATGATGAGGGAAAAAGTTGAAGGGACACGGGTGACATTCAACATTCTTCTTGATGGGTTTGCCAAACAAGGTCACTACAT GGAAGCTAGGGATGTGATAAATGAATTCAAGAAGTTTGGCTTGCATCCAACAGTGATGACATATAACATGCTGATGAACGCATATGCACGGGGAGGTCAA GACTCAAAGTTGCCTCAGCTGTTGAAAGAAATGGCCACTCTCAAACTAGAACCTGATTCCATCACTTATACGACCATGATCTATGCATATGTCCGAGTTC GTGATTTTAGGAGGGCATTCTTTTATCACAAGATGATGGTGAAAAGTGGTAAGGTACCAGATGCCAAGTCCTACCAAAAGCTTAGGGCAATATTGGATGT AAAAGCTGCAATAAAGAACAGGAGGGACAAGAGTGCTATACTTGGTATAATTAATAGCCAAATGGGTATGTTGAAAGTTAAGAAGAAAAGGAAGAAAGAT GAGTTCTGGAAGAACAAGAAAAGGCATGTGAGGGCTCCTAATGTTTCCCATGATAAATAA
AA sequence Show only first row Show all	>Potri.012G091800.1 pacid=42783415 polypeptide=Potri.012G091800.1.p locus=Potri.012G091800 ID=Potri.012G091800.1.v4.1 annot-version=v4.1 MAAAALTNQASLSSPLLFNNPHPNPNYSKSHLSILSKPSRQSFSLLATSHSSPAIFLLFLEHEKQEVEHLSTAQTQQDGDGDDANVEDKDGVEEGEEEEE DSVDPILRFFKSQTSTTHDPPRQGKFSLKKNRRSSWRLAPQFDSDTLNEESPQIVTSNSVSRLPDRVVGEILKLARELPKNMTLGEILGGYEGRVSAKES VEILGLMGEEGLLMGCLYFYEWMGLQEPSLVTARACTILFPILGRAGMGDKLVIFLRNLPQQKEFLDVHVYNSAISGLLCCGRYNDAYEVYEAMEAYNVS PDHVTCCIMITVMRKKGCTAKEAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEM QAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAY ITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQ DSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDAKSYQKLRAILDVKAAIKNRRDKSAILGIINSQMGMLKVKKKRKKD EFWKNKKRHVRAPNVSHDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	0	1
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.005G250200 [exp]	4.00	0.9599
AT5G49690			UDP-Glycosyltransferase superf...		Potri.003G184400 [exp]	7.61	0.9289
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	8.12	0.9529
AT3G60590			unknown protein		Potri.014G061000 [exp]	8.94	0.9498
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.001G297300 [exp]	10.39	0.9379
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	10.58	0.9523
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	16.79	0.9528
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	17.32	0.9512
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	19.62	0.9510
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	19.89	0.9419

Compare expression of checked genes

Potri.012G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.