Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63200 756 / 0 tetratricopeptide repeat (TPR)-containing protein (.1) AT3G04240 68 / 2e-11 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 64 / 2e-10 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208900 [exp] 69 / 8e-12 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 68 / 1e-11 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G051400 [exp] 59 / 1e-08 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 57 / 5e-08 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G177400 [exp] 45 / 0.0002 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013661 [exp] 810 / 0 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033033 [exp] 523 / 1e-179 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021336 [exp] 61 / 2e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003113 [exp] 59 / 8e-09 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 58 / 2e-08 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 58 / 3e-08 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003576 [exp] 55 / 2e-07 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012876 [exp] 44 / 0.0004 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10021972 [exp] 42 / 0.0005 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10032883 [exp] 43 / 0.001 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.012G092000.1 pacid=42784134 polypeptide=Potri.012G092000.1.p locus=Potri.012G092000 ID=Potri.012G092000.1.v4.1 annot-version=v4.1 ATGTCGCAACCGCAACCCTGGGCGCGGGCCCTTCAGCAATCAATAAAACCAGAACTCGTAACCGTAGACGCCAACTCCACAGAAACCACCTCAAAAATTC CCCAACCTCCTCACAAACTCGTCATTTTAGCCGACCTCAACGCCAACCCCCCTGAATCCGACACCACCGATTCCCTCCATTTGTCACCATCTGACCTCAC GAAATTAAAGGACGAAGCACAGGATAACAAACCTAACTTAACATCCAAAGAAGCAGATAACAACGCCGCCGTAGAAGTTACTGAAGGCAAAAAATCAAGC AGTAAATTAGGTAAATCACGTTCGCGTAACAGTAAATTAGACAACCCTCTCGATTACGGACCTGATAATGATAATGACCAGCCTAACCAAGGTCCTTCTT CCTATCGTGAAGAGAGAGTTAGCAGTCTCAAAACGGGATTGTTACATGTTGCGAAGAAGATGCCGAAGAATGCACATGCGCATTTTATACTTGGATTAAT GTACCAAAGATTAAGCCAGCCTCAAAAGGCGATTTTGGCTTATGAGAAGGCCGAAGAGATATTGCTTCGTTGCGAGGCTGAGGTAGCTCGGCCGGATTTG CTTTCCTTAGTTCAAATTCACCACGCCCAGTGTATTTTGCTTGAAACTAGTGGCGATAATAGCTTGGAGAAGGAACTTGAAGGGCAAGAGCTTGAGGACG TTCTGTTTAAATTGAAGGAGTCGATGCAATCGGATATTAGACAAGTAGCTGTTTGGAACACCCTAGGTTTGATACTTCTTAAATCTGGCCGTGTGCAGAG TGCTGTTTCAGTTTTGTCTGCGTTGATGGCTGTTGATCCTAACAACTACGATTGCCTTGCAAACTTGGGGATTGCATTCCTGCAAAGTGGAAATTTGGAA CTATCAGCAAAATGTTTTCAAGATTTGATCCTTAAAGATCAAAACCATCCTTCGTCCCTTGTGAACTATGCTGCCGTTCTTCTTTCTAAATATGGTTCGG TTGTTGCAGGTGCTGGGGCAAATGCTGGAGTAGGTGCTTCTGTAGATCAGGCTGAAGCTATCAATGTTGCAAAGGAGTGTTTACTAGCTGCACTTAAACT GGAACCAAAAGCAGCACATATTTGGGCTAATCTTGCTAATGCATATTTCATGATTGGTGACCACAGAAGTGCCAGCAAGTGCTTGGAGAAGGCAGCAAAA CTGGAGCCCAACTGTATGTCTACTCGATATGCTGTGGCAGTTCACCGAATAAAGGATGCAGAAAGGTCTCAAGATCCTAGTGAACAACTTTCCTTGGCAG GAAATGAAATGGCTTCAATATTAAGAGAGGGAGATTCTGTTCCAATTGATCTTCCCATTGCATGGGCTGGACTTGGCATGGTTCACAAGGCGCAACACGA GATTGCTGCAGCATTTGATACAGAATCAAATGAGTTGATGGAGGTGGAAGAGCGTGCTCTCTTCAGCTTGAAGCAGGCAATTGCTGAGGATCCTGATGAT GGGGTGCAGTGGCACCAACTCGGTCTGCATTATCTCTGTTCCCGACAATTTAAAGCAGCAGAGAAGTATCTCAAGGTTGCAGCTTCCCGCTCTAGAGAAT GCTGCTACATGTGGTCAAATCTGGGTATCTCACTACAATTATCAGAAGAACCCTCACAAGCGGAAGCCGTCTATAAGGAAGCATTGGCACGGGCAACACC TGAACAAGCACACACAATATTCTCCAACCTGGGAAATCTCTACCGGCAGCAAAAGCAATATGACCGTGCCAAGGCTATGTTTACAAAGGCTCTTGAACTC CAGCCTGGCTATGCTCCTGCATTTAACAATCTTGGTCTGGTATTTGTAGCTGAGGGTCGGTGGGAGGAGGCCAAGTACTGCTTCAACAAGGCCCTCGAGG CAGACTCTTTACTGGATGCTGCCAAGTCCAACATGATCAAAGCAGAGTCTGTATCTAGATTGAGTGCAGGGTTGTCCTCGTGTCGCTGTCAGGATTAG
AA sequence Show only first row Show all	>Potri.012G092000.1 pacid=42784134 polypeptide=Potri.012G092000.1.p locus=Potri.012G092000 ID=Potri.012G092000.1.v4.1 annot-version=v4.1 MSQPQPWARALQQSIKPELVTVDANSTETTSKIPQPPHKLVILADLNANPPESDTTDSLHLSPSDLTKLKDEAQDNKPNLTSKEADNNAAVEVTEGKKSS SKLGKSRSRNSKLDNPLDYGPDNDNDQPNQGPSSYREERVSSLKTGLLHVAKKMPKNAHAHFILGLMYQRLSQPQKAILAYEKAEEILLRCEAEVARPDL LSLVQIHHAQCILLETSGDNSLEKELEGQELEDVLFKLKESMQSDIRQVAVWNTLGLILLKSGRVQSAVSVLSALMAVDPNNYDCLANLGIAFLQSGNLE LSAKCFQDLILKDQNHPSSLVNYAAVLLSKYGSVVAGAGANAGVGASVDQAEAINVAKECLLAALKLEPKAAHIWANLANAYFMIGDHRSASKCLEKAAK LEPNCMSTRYAVAVHRIKDAERSQDPSEQLSLAGNEMASILREGDSVPIDLPIAWAGLGMVHKAQHEIAAAFDTESNELMEVEERALFSLKQAIAEDPDD GVQWHQLGLHYLCSRQFKAAEKYLKVAASRSRECCYMWSNLGISLQLSEEPSQAEAVYKEALARATPEQAHTIFSNLGNLYRQQKQYDRAKAMFTKALEL QPGYAPAFNNLGLVFVAEGRWEEAKYCFNKALEADSLLDAAKSNMIKAESVSRLSAGLSSCRCQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63200			tetratricopeptide repeat (TPR)...		Potri.012G092000 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	6.85	0.7842
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	9.05	0.7799
AT5G57910			unknown protein		Potri.018G105300 [exp]	10.48	0.7318
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	14.17	0.7498
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	15.68	0.7415
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	19.59	0.7317
AT5G53420			CCT motif family protein (.1.2...		Potri.015G014000 [exp]	22.75	0.7380
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	24.49	0.7067
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	29.39	0.7281
AT4G36580			AAA-type ATPase family protein...		Potri.005G122300 [exp]	30.33	0.6993

Compare expression of checked genes

Potri.012G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.