Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63260 363 / 7e-122 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 361 / 5e-121 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 214 / 1e-64 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 207 / 2e-62 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 205 / 4e-61 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G06410 202 / 3e-59 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G18550 196 / 2e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 191 / 3e-55 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT2G32930 170 / 2e-47 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 154 / 3e-41 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089100 [exp] 611 / 0 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 222 / 4e-67 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 218 / 8e-66 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 214 / 4e-64 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 209 / 2e-62 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G022500 [exp] 207 / 3e-61 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 199 / 5e-58 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G080300 [exp] 155 / 8e-42 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 153 / 1e-40 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043330 [exp] 384 / 2e-129 AT5G63260 357 / 3e-119 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10019481 [exp] 352 / 3e-116 AT5G63260 339 / 6e-112 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 209 / 2e-62 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 208 / 4e-62 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 199 / 3e-58 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10033962 [exp] 193 / 6e-56 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 189 / 5e-54 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10029988 [exp] 188 / 1e-53 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 184 / 9e-53 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10035248 [exp] 176 / 1e-49 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.012G092500.2 pacid=42783263 polypeptide=Potri.012G092500.2.p locus=Potri.012G092500 ID=Potri.012G092500.2.v4.1 annot-version=v4.1 ATGGACCAACAAATTGAATCACCTATCCCAATAATTCATAAAGAAATCCCTCAGCTGGGGTTTCAATCTTTCTCTTCCTCTCCCCGATTCCCCTCTACGC CGTCTGATCCTGATCAAACGGCCCTGGATGACGATAACCATCTTCATCAAGAGCTACAGAACCAGCTTGACTTGAAAGAGGGGTCTCTAAATTCGAATGA TTCTCATGAAGAAGAAGAAGAAGAGGAGGAGGAATTCAAGAGTGATAAAAAGATTGAATTTTTTTATGAGAGCATTGAGAAGGTAGGTGATGGTGGTGAT GATTTAGAGAACAAGAATGAGAGAAGTAACGACATTGAGAATAATAACAGCAGTGGGTATCATCAGTATCCTGTGAGACCTGAAGCAGAGGATTGCGCCT TTTATATGAAGACTGGGACATGCAAATTTGGAGCTAATTGCAAGTTTAATCATCCTCTCAGAAGGAAAAATCAGACTGTCAAGGAGAAGACAAAGGAAAG GGAAGAAGCAACAGAGAAGCCCAGCCTGATTGAATGCAAGTACTACTTGAAGACAGGAGGCTGTAAGTATGGAACAGCTTGTAGGTTCAACCACTCGAGA GCAAAATATTCAGTGCCCCCAGTGAAAATTCCAATGTCACCAGCTTTAGAGCTCAATTTTCTGGGTCTTCCAATCCGACTGGGAGAGAAAGAGTGTGAGT ATTTCATGCGCAATGGCTCCTGCAAGTTTGGAGCTAACTGCAAGTATAATCATCCAGATCCTACAGCTGTGGGAGGAAGTGACCATCCTTCAACATTTCT TAATGGTGGATCTGCTTCTCTACCAGTTCCATCATCATCAAGTGTAGGTTCTTGGTCTTCACCGAGGGCATTAAATGATCCTACATCCTTTGTCCCAATT ATGTTTTCACCAAATCAAGGAGTTCCTCCTCAAAGTCCAGATTGGAATGGATATCAGGCTCCTCTATACCCTCCAGAAAGAAGTCTGCATCCACCTCTGT CATATGCCTTAATCAACATTGCAACTGAAAGCAATGTCTATGCACCTCAGCAACAGCAAATAGTAGTTGATGAATTCCCAGAACGACCTGGTCAACCGCA GTGCAGTTTTTACATGAAATTTGGGGACTGTAAGTTCAAATCCAACTGCAAATATCATCATCCAAAGAATCGGATCTCAAAGTCACCCCCACTAACTCTG AGTGACAAGGGCCTGCCACTGAGACCTGATCAAAATATCTGCTCTCACTACAGCCGCTATGGTATTTGCAAGTTTGGGCCTTCCTGTAAATTTGACCATT CAATACAACCAGCTTCTTCAATAGGATCTAGTGATGATCAGAACACTGCTTTTGGCAACTCTGTGACCCAGGAAGCGGCTAGAATGGCTGAAAGCGGAAA TGGAAGTGATACAGCGGTTGAGTAG
AA sequence Show only first row Show all	>Potri.012G092500.2 pacid=42783263 polypeptide=Potri.012G092500.2.p locus=Potri.012G092500 ID=Potri.012G092500.2.v4.1 annot-version=v4.1 MDQQIESPIPIIHKEIPQLGFQSFSSSPRFPSTPSDPDQTALDDDNHLHQELQNQLDLKEGSLNSNDSHEEEEEEEEEFKSDKKIEFFYESIEKVGDGGD DLENKNERSNDIENNNSSGYHQYPVRPEAEDCAFYMKTGTCKFGANCKFNHPLRRKNQTVKEKTKEREEATEKPSLIECKYYLKTGGCKYGTACRFNHSR AKYSVPPVKIPMSPALELNFLGLPIRLGEKECEYFMRNGSCKFGANCKYNHPDPTAVGGSDHPSTFLNGGSASLPVPSSSSVGSWSSPRALNDPTSFVPI MFSPNQGVPPQSPDWNGYQAPLYPPERSLHPPLSYALINIATESNVYAPQQQQIVVDEFPERPGQPQCSFYMKFGDCKFKSNCKYHHPKNRISKSPPLTL SDKGLPLRPDQNICSHYSRYGICKFGPSCKFDHSIQPASSIGSSDDQNTAFGNSVTQEAARMAESGNGSDTAVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.012G092500 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.005G225600 [exp]	6.70	0.6773
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	21.44	0.5959
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	24.06	0.6580
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	31.70	0.6313
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	36.60	0.6510	RHD2.2
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	38.26	0.5865	HMT1,SMTA.1
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	39.24	0.6422
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	42.49	0.6214
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145582 [exp]	44.09	0.6409
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.008G156600 [exp]	46.74	0.6254

Compare expression of checked genes

Potri.012G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.