Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GHS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27160 79 / 3e-18 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1) AT5G63300 63 / 3e-12 Ribosomal protein S21 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331600 [exp] 84 / 2e-20 AT3G27160 135 / 2e-40 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041564 [exp] 70 / 4e-15 AT3G27160 140 / 8e-43 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1) Lus10012528 [exp] 70 / 5e-15 AT3G27160 140 / 2e-42 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01165 [poplar] [flax] Ribosomal_S21 Ribosomal protein S21
Representative CDS sequence Show only first row Show all	>Potri.012G092700.2 pacid=42784036 polypeptide=Potri.012G092700.2.p locus=Potri.012G092700 ID=Potri.012G092700.2.v4.1 annot-version=v4.1 ATGGCCATAGCGACTGCAGCCTCCTCTCTTCTCCACTCAAAACCACCACCACCACCACCAACTCTCCTTTCTCATTCCCCACAATCAGCACAACAACTTC ACCTTCCCAAAACAACATCCTCCAAATGGACCCCATTAGTACTCACCACGAGTCATTCAACCTTGGAAAAGACCATGCCCACGACAAGTCGTTCCACTAA TTTCCCAGACCTCTCTTTCCTTTCTTCTTTGACAACATCTGCTATTGATAATCTAGCCATGGTGAGTCCTTCACTTGCATATGCGAACACCCTTTACTTC AAATTTGGATTTAACGTGCAAATCAACGTGAAAGAGAACGAGCCTGAGGAGAGTATACTGTTTCGGTTCAAGAAAGCTGTTATAAGGGCACGTGTTTTGC AGGAGTGTAGGAGGAGGAGGTTCTTTGAGAGCACACAAGATAAGAAGAAGAGAAAAACTAGAGATGCTGCTAGAAGAAACAGTCAGAGGTTAGAATTTGT ACTTTCTTTTCTTTCTTTCTTTCGTTATGTTTTGGTTTTGGTTTTGGTTTTTATTTATTTTGTTGCTACTTTTGGATTGATTGTGCAATTTGGTTGA
AA sequence Show only first row Show all	>Potri.012G092700.2 pacid=42784036 polypeptide=Potri.012G092700.2.p locus=Potri.012G092700 ID=Potri.012G092700.2.v4.1 annot-version=v4.1 MAIATAASSLLHSKPPPPPPTLLSHSPQSAQQLHLPKTTSSKWTPLVLTTSHSTLEKTMPTTSRSTNFPDLSFLSSLTTSAIDNLAMVSPSLAYANTLYF KFGFNVQINVKENEPEESILFRFKKAVIRARVLQECRRRRFFESTQDKKKRKTRDAARRNSQRLEFVLSFLSFFRYVLVLVLVFIYFVATFGLIVQFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.012G092700 [exp]	0	1	GHS1.2
					Potri.015G024900 [exp]	8.83	0.8672
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.008G173300 [exp]	19.44	0.8600
AT2G45260			Plant protein of unknown funct...		Potri.014G067600 [exp]	26.83	0.8571
					Potri.018G145518 [exp]	27.49	0.8077
AT1G30800			Fasciclin-like arabinogalactan...		Potri.011G155150 [exp]	27.71	0.8455
AT1G07930			GTP binding Elongation factor ...		Potri.016G086450 [exp]	40.89	0.8355
					Potri.006G062150 [exp]	42.98	0.8546
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.004G120600 [exp]	44.98	0.8273
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076300 [exp]	46.47	0.7878
AT3G07440			unknown protein		Potri.007G083100 [exp]	49.98	0.8086

Compare expression of checked genes

Potri.012G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.