Plant FIBer expression Database

Potri.012G092800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50320 1032 / 0 EAST1, AtELP3, HAC8, ELO3 ,HAG3 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090500
[exp]
1085 / 0 AT5G50320 1065 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014792
[exp]
1048 / 0 AT5G50320 1088 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Lus10001102
[exp]
1036 / 0 AT5G50320 1080 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0036 PF16199 Radical_SAM_C Radical_SAM C-terminal domain
Representative CDS sequence
>Potri.012G092800.1 pacid=42783630 polypeptide=Potri.012G092800.1.p locus=Potri.012G092800 ID=Potri.012G092800.1.v4.1 annot-version=v4.1
ATGGCAACTGCAGTAATTACCGAGACCAAAAAACTCCCGCGGCCGGGTCGCGGCGGGTACCAACCTCACGTACTAACCGAAGAAGAAGCTAGAGTCCGAG
CCATAGCCGAAATCGTCAATTCCATGGTAGAGCTTTCGAGAAAAAACCAAACCGTTGATCTTAACGCCCTAAAATCCGCCGCCTGTCGCAAATACGGCCT
TGCACGTGCTCCAAAACTCGTCGAGATGATCGCAGCGTTGCCGGAATCCGATCGCGAGTCACTGCTACCGAAACTCCGGGCTAAACCGGTACGCACCGCA
TCAGGAATTGCAGTTGTTGCCGTCATGTCGAAGCCGCACCGGTGTCCGCATATCGCGACGACAGGGAATATTTGTGTGTATTGTCCTGGTGGACCGGACT
CTGATTTTGAGTACAGTACTCAGTCGTATACTGGTTATGAACCTACTAGTATGCGTGCGATTCGTGCTAGATATAACCCATATGTCCAGGCTAGAAGCAG
GATTGATCAGCTTAAGAGACTGGGTCATAGTGTAGATAAGGTGGAGTTCATATTAATGGGGGGTACTTTCATGTCATTGCCAGCAGATTACCGTGATTAC
TTTATAAGGAATCTTCATGATGCTTTATCAGGGCACACATCTGCCAATGTTGAGGAGGCAGTTGCCTACTCCGAGCATGGTGCAACAAAGTGCATTGGCA
TGACAATTGAGACGAGGCCAGATTATTGTCTTGGTCCTCATCTACGCCAAATGCTTTCATATGGGTGCACACGATTGGAGATTGGAGTTCAAAGCACGTA
TGAGGATGTTGCTCGAGACACTAATAGAGGACACACTGTAGCTGCTGTTGCTGATTGTTTTTGCTTGGCAAAGGATGCTGGTTTTAAGGTTGTTGCTCAT
ATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACTTGGAAAGTTTTCGAGAGTTCTTTGAGAGTCCTTCTTTTAGAGCAGATGGGCTCAAAATTT
ATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTATGGAAAACTGGCAGGTATAGAAATTACCCACCTGAGCAACTTGTAGATATTGTAGCAAG
GATCCTAGCCATGGTACCCCCTTGGACACGTGTATATAGAGTTCAACGAGATATTCCTATGCCTTTAGTTACATCTGGAGTTGAGAAAGGAAATCTCAGG
GAGTTAGCCTTAGCTAGGATGGATGATTTGGGCCTGAAATGCCGTGATGTCCGTACACGTGAGGCTGGAATCCAGGACATTCATCACAAAATTAAGCCAG
AAGAAGTTCAGCTAGTTCGCCGTGATTATACTGCTAATGAAGGCTGGGAAACATTTCTTTCCTATGAGGATACACGCCAGGATATTCTTGTTGGGCTACT
GCGCTTACGAAAATGTGGCTGCAATGTTACTTGCCCTGAGCTTATGGGGAAGTGCTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCAGTTCCTGTT
CATGGGCGTGATGCGGAGAAGCTGCAACACCAGGGTTATGGTACACTTTTGATGGAAGAGGCAGAACACATTGCTCGCAAGGAGCATAGATCAACCAAAA
TAGCTGTCATTTCAGGTGTAGGAACCCGTCATTACTACAGAAAATTGGGCTATGAGCTTGAAGGGCCATACATGGTGAAATTTCTTTCTTGA
AA sequence
>Potri.012G092800.1 pacid=42783630 polypeptide=Potri.012G092800.1.p locus=Potri.012G092800 ID=Potri.012G092800.1.v4.1 annot-version=v4.1
MATAVITETKKLPRPGRGGYQPHVLTEEEARVRAIAEIVNSMVELSRKNQTVDLNALKSAACRKYGLARAPKLVEMIAALPESDRESLLPKLRAKPVRTA
SGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDY
FIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAH
MMPDLPNVGVERDLESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLR
ELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVQLVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGCNVTCPELMGKCSIVRELHVYGTAVPV
HGRDAEKLQHQGYGTLLMEEAEHIARKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKFLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50320 EAST1, AtELP3, ... HISTONE ACETYLTRANSFERASE OF T... Potri.012G092800
[exp]
0 1
AT3G13460 ECT2 evolutionarily conserved C-ter... Potri.019G034300
[exp]
8.36 0.8742
AT5G58070 ATTIL temperature-induced lipocalin ... Potri.018G110800
[exp]
11.48 0.8817
AT4G27540 PRA1.H prenylated RAB acceptor 1.H (.... Potri.011G116200
[exp]
13.41 0.8757
AT1G15710 prephenate dehydrogenase famil... Potri.001G201100
[exp]
14.17 0.8849
AT1G65030 Transducin/WD40 repeat-like su... Potri.012G107400
[exp]
18.89 0.8712
AT4G36580 AAA-type ATPase family protein... Potri.007G023900
[exp]
20.24 0.8678
AT3G53630 unknown protein Potri.006G082400
[exp]
22.09 0.8751
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.012G105900
[exp]
23.23 0.8359 CLPC.1
AT2G37975 Yos1-like protein (.1) Potri.016G109500
[exp]
24.81 0.8493
AT5G40570 Surfeit locus protein 2 (SURF2... Potri.001G342400
[exp]
25.09 0.8420

Potri.012G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.