Plant FIBer expression Database

Potri.012G092900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63290 629 / 0 Radical SAM superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001104
[exp]
695 / 0 AT5G63290 611 / 0.0 Radical SAM superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0123 HTH PF06969 HemN_C HemN C-terminal domain
Representative CDS sequence
>Potri.012G092900.2 pacid=42783205 polypeptide=Potri.012G092900.2.p locus=Potri.012G092900 ID=Potri.012G092900.2.v4.1 annot-version=v4.1
ATGCTAAAATCAACCTTCGTTCCAATTCTCTCAACATTTCCAACCAAACCCAAAAAGCTCCCTACAAAACTTCCATGGCTGACGGTCATCACCAACACCT
ACACACAAAGCCCACAACCTGTTCACCAAAATGCCTCGCTTACCACACCACCACCACCACCACCACCACCACCACCACTTCATCAACACAACCACCCTCC
AACTTCAGCTTACATTCACCTCCCTTTCTGCCGCAAACGCTGCCACTACTGTGACTTTCCAATTGTTGCTCTTGGCTCCACAAACCCAACCGACAACGAC
CCGCGAATCTCTAACTATATTGAATTACTTCAACGTGAAATAGTCTCAACAAGGTCGGATTTTGATACCATTCCGCCACTTGAAACTGTGTTTTTTGGTG
GTGGGACTCCTTCTTTGGTGTCCCCAAGGATGGTTTTGTCGATATTGGATACGTTGAGGGTGAAATTTGGAGTTTGTGAGGGTGCTGAGATATCTATGGA
AATGGATCCTGGGACCTTTGATGGTAGGAAAGTTAAGGACTTGATGGGGATGGGTGTGAATAGAGTATCTTTAGGAGTTCAGGCTTTTCAGGAGGAGTTG
CTAAAATCTTGTGGGAGGGCACATGGGGTTAAGGAGGTTTATGAGGCAATTGAGATTTTGGGGTCATGTGGGGTGGAGAATTGGAGTGTTGATCTTATCT
CTTCACTGCCTCTCCAGACTCCACAAATGTGGGAGGAGAGTTTGAGGCTCACCATCGAAGCGAGGCCTAAGCATGTGTCTGTTTATGATCTGCAGGTTGA
ACAAGGCACGAAATTTGGAGCATTGTACACGCCAGGGGAGTTTCCTTTGCCATGCGAAACACAATCTGCTGAGTTTTATAGAATGGCCTCGAGGATGCTT
GCTGATGTGGGTTACAGACATTATGAAATTAGCAGTTATTGTGAAGACGGGTATGAATGCAAGCACAATTATACATACTGGAAGAACAAACCCTTCTATG
GTTTTGGCCTTGGTTCTGCTAGTTATCTCAATGGATTGAGGTTTTCCAGGCCAAGGAAGATGAAAGAGTACATGGGTTATGTGGAGAATTTGGAGAACGG
AGTGGTAAATTATTGTGGGAATAATCTTGTTGATGCCAAAGACTTGGCTGTGGATATTGTGATGCTCTCACTTAGAACTGCAAGAGGCCTCGATTTGAGG
TCTTTTGCAGAAGCATTTGGTGGATCACTTGTTCATTCTCTTTGCAAGGTCTATCAACCCTACATAGAGAGTGGGCATGTGGTTTGCTTGGATGAGGAGC
GAAGAGCCATGACTGTAGATGAATTCAACACCTTGTTTTTGAACGAAGATGAGATTGCAAAGGGGTTATCTTATATCCGGCTCAGTGATCCAGATGGTTT
TCTGTTATCAAATGAATTGATATCCCTTGCATTTAGGGTCATAGATCCCTAG
AA sequence
>Potri.012G092900.2 pacid=42783205 polypeptide=Potri.012G092900.2.p locus=Potri.012G092900 ID=Potri.012G092900.2.v4.1 annot-version=v4.1
MLKSTFVPILSTFPTKPKKLPTKLPWLTVITNTYTQSPQPVHQNASLTTPPPPPPPPPPLHQHNHPPTSAYIHLPFCRKRCHYCDFPIVALGSTNPTDND
PRISNYIELLQREIVSTRSDFDTIPPLETVFFGGGTPSLVSPRMVLSILDTLRVKFGVCEGAEISMEMDPGTFDGRKVKDLMGMGVNRVSLGVQAFQEEL
LKSCGRAHGVKEVYEAIEILGSCGVENWSVDLISSLPLQTPQMWEESLRLTIEARPKHVSVYDLQVEQGTKFGALYTPGEFPLPCETQSAEFYRMASRML
ADVGYRHYEISSYCEDGYECKHNYTYWKNKPFYGFGLGSASYLNGLRFSRPRKMKEYMGYVENLENGVVNYCGNNLVDAKDLAVDIVMLSLRTARGLDLR
SFAEAFGGSLVHSLCKVYQPYIESGHVVCLDEERRAMTVDEFNTLFLNEDEIAKGLSYIRLSDPDGFLLSNELISLAFRVIDP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63290 Radical SAM superfamily protei... Potri.012G092900
[exp]
0 1
AT5G15300 Pentatricopeptide repeat (PPR)... Potri.017G086100
[exp]
1.00 0.9768
AT1G05750 PDE247, CLB19 pigment defective 247, Tetratr... Potri.001G217600
[exp]
2.44 0.9545
AT3G49170 EMB2261 embryo defective 2261, Tetratr... Potri.015G018700
[exp]
2.64 0.9523
AT2G03050 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH AC... Potri.010G167400
[exp]
4.69 0.9485
AT5G25752 ATRBL11 ARABIDOPSIS RHOMBOID-LIKE PROT... Potri.018G037300
[exp]
5.47 0.9556
AT3G09650 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.016G085300
[exp]
8.00 0.9512
AT4G25270 OTP70 organelle transcript processin... Potri.015G128800
[exp]
8.48 0.9540
AT2G31810 ACT domain-containing small su... Potri.007G142300
[exp]
9.48 0.9376
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Potri.004G164000
[exp]
12.96 0.9358
AT1G77405 Pentatricopeptide repeat (PPR)... Potri.002G080300
[exp]
15.16 0.9259

Potri.012G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.