Plant FIBer expression Database

Potri.012G093000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62640 171 / 5e-47 AtELF5, ELF5 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090200
[exp]
454 / 2e-155 AT5G62640 159 / 2e-42 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042169
[exp]
322 / 4e-104 AT5G62640 244 / 3e-74 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Lus10004261
[exp]
237 / 2e-71 AT5G62640 242 / 2e-73 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09429 Wbp11 WW domain binding protein 11
PF12622 NpwBP mRNA biogenesis factor
Representative CDS sequence
>Potri.012G093000.2 pacid=42783129 polypeptide=Potri.012G093000.2.p locus=Potri.012G093000 ID=Potri.012G093000.2.v4.1 annot-version=v4.1
ATGAAGACGACGAAAGGAGGCAAAGTTATGAACCCTACGGATGCTTATCGAAAGGAACTCCGTAAGAAGGAATTAAAACGGAACAAGAAGGAAAGAAAGA
AGGTGAGAGAGGTGGGGATTTTGAAGAAGGATCCTGAGGTGATAAAGGATCAGATAGAGAAGTTGGAATTGATGAAGGCTGATGGTGCTTTAGACAAAGC
AAGAAAACACAAGAAAAGACAACTTCAGGATACTCTTAGCCTTGTTTTGAAGAAGAGAAGGGAATATGAAGATAAAATGAAGGAGAAGGGTGAAACCCCT
GTGATGTTCAGTCATTTGGGCCCTCTTCGAAGGACATCCACAGAAGAAGAAGAACGAGCCAAGCATCCAAAGCCTGAAGATTCTGTATACTATCACCCTA
CTCTGAATCCTACTGGGGCCCCACCACCTGGAAAGCCTCCCATGTATAAATCATCTATAGGGCCCCGAATACCTTTATCCGGTGCTTCATCCTCTGCAAC
TGAATCAGAGGATGTTGCTTTAACAATACCTCCTCCTTTGCCAGAGAGCGGTGAATTAGGCCTTGGTGATAGCTCTGTTATACCTGCTTCATTGCCCCTA
CCTCCTCTACCTCCGATGCCACCAAAGCCTGCAGATTCAAGCTTGGGCATGTCATTGCCTCCACCCCCTTTACCTCCCCCTCCTCCAGGTCCTCCACCAA
AAGACCAAGTATTGAGTCACACACCTCTTCCTCCACCTCCACCCCTCCAACAGTCTGCTCAGCCACCACCACCTGGCACAAATGAAAGTGGGAGGGAGAC
CAACATATCGGCATTGTTAGATGAATCATCCTCCAATGATACTGTTCAGGTACCTGCTTCACTCCCTCCACCTCCTCCAATTGCAATGCCACTTAAGTCA
GCTATTAATCAGACTGAAGGCAGTTCATTTGAAGCTGATGCCAATACCACAGCAACTATGGATAACCCTAAAATGGTTCCCCCACCACCTCCTCCTAGGC
AACAGCCTCTAGCACCAGGACCAGCCTTGATCCCAGCTTTACAGCCTGATGTATTACCCCCAGGAATATTGCGTTTCCCCCCACCTCCACCTCCACCTCC
ACCAAATATGCGGCCACCATTATCAACCCCTGGAATTCCCAGCCAAATGGCTCCTCCAGGGGTGACGGTCCCATTTATTCCCAGACCTCCTTATGGTCCT
CCACCTGGACCTCCTCCAATGATGAGACCACCCCTTCCACCTGGTCCTCCTCCTTTACAAGAAGATGCTGCAATTTGGCCACCTGTTCCTCAGAAACCAT
CATATGTAAAATCTGCTGCATCCACTGTTGTTAAAAGGCTGCTAGCACAGCACACTCCAGAACTTACAGCTATGGTTCCTGCCTCAGTTCGAGTGAGGAG
AGAGGCTGTCATCCCTAAATCAAAACCAAAAGCTGGAACCTCAACCACAGCAGTAGCTACCAGGCCAACAGCTCCAACCACTGTGAAGCCAGAGTCTACT
AACTCATCATCAGCTCCGAAGTCTCAGAGTATTGATGACTCATATATGGCCTTTTTAGAGGACATGAAAACCCTTGGTGCTCTCGATGGTTAA
AA sequence
>Potri.012G093000.2 pacid=42783129 polypeptide=Potri.012G093000.2.p locus=Potri.012G093000 ID=Potri.012G093000.2.v4.1 annot-version=v4.1
MKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPEVIKDQIEKLELMKADGALDKARKHKKRQLQDTLSLVLKKRREYEDKMKEKGETP
VMFSHLGPLRRTSTEEEERAKHPKPEDSVYYHPTLNPTGAPPPGKPPMYKSSIGPRIPLSGASSSATESEDVALTIPPPLPESGELGLGDSSVIPASLPL
PPLPPMPPKPADSSLGMSLPPPPLPPPPPGPPPKDQVLSHTPLPPPPPLQQSAQPPPPGTNESGRETNISALLDESSSNDTVQVPASLPPPPPIAMPLKS
AINQTEGSSFEADANTTATMDNPKMVPPPPPPRQQPLAPGPALIPALQPDVLPPGILRFPPPPPPPPPNMRPPLSTPGIPSQMAPPGVTVPFIPRPPYGP
PPGPPPMMRPPLPPGPPPLQEDAAIWPPVPQKPSYVKSAASTVVKRLLAQHTPELTAMVPASVRVRREAVIPKSKPKAGTSTTAVATRPTAPTTVKPEST
NSSSAPKSQSIDDSYMAFLEDMKTLGALDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.012G093000
[exp]
0 1
AT4G31200 SWAP (Suppressor-of-White-APri... Potri.006G279800
[exp]
2.00 0.9167
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
4.00 0.9094 ELF5.2
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
5.65 0.8850
AT1G26110 DCP5 decapping 5 (.1.2) Potri.010G131400
[exp]
9.16 0.8884
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
13.22 0.8791
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
14.69 0.8696
AT4G16280 FCA RNA binding;abscisic acid bind... Potri.010G147900
[exp]
15.49 0.8745
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.013G018700
[exp]
17.14 0.8709
Potri.001G310801
[exp]
19.05 0.8580
AT5G06160 ATO ATROPOS, splicing factor-relat... Potri.015G017200
[exp]
21.44 0.8492

Potri.012G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.