Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) AT1G13195 299 / 1e-102 RING/U-box superfamily protein (.1.2) AT5G01520 222 / 8e-73 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 214 / 1e-69 RING/U-box superfamily protein (.1.2) AT5G58787 200 / 4e-64 RING/U-box superfamily protein (.1.2) AT4G14220 44 / 5e-05 RHF1A RING-H2 group F1A (.1) AT5G37200 42 / 0.0002 RING/U-box superfamily protein (.1) AT5G37250 41 / 0.0002 RING/U-box superfamily protein (.1) AT2G20030 42 / 0.0003 RING/U-box superfamily protein (.1) AT5G05130 42 / 0.0004 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089800 [exp] 466 / 1e-168 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.008G181300 [exp] 353 / 3e-124 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 349 / 2e-122 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 255 / 1e-85 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 245 / 8e-82 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 239 / 2e-79 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 235 / 8e-78 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 232 / 1e-76 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 227 / 1e-74 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006253 [exp] 350 / 1e-122 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 342 / 2e-119 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10011391 [exp] 325 / 2e-113 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10006448 [exp] 325 / 3e-113 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10036934 [exp] 260 / 3e-87 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 257 / 2e-86 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 252 / 2e-84 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 249 / 2e-83 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 224 / 2e-73 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 216 / 2e-70 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G093300.1 pacid=42783504 polypeptide=Potri.012G093300.1.p locus=Potri.012G093300 ID=Potri.012G093300.1.v4.1 annot-version=v4.1 ATGATGGAATATCTTGAGCTTGCTGCGATGTCATCGTACAAAGACTCCCTTAAGGTTCTCGAGGCTGATATTCAGCATGCTAATGTGTTGGCAGCTTCTA TTCCAAGAGCCAAAAGTGGTTCCTGTCTTCAAATGAAACTGGTTTATAATCACCTGGCACCCATATTTCTGTTTTTGCTCCAATGGATGGATTGCTCATG TACATGTCTACTTTCAACTTATTTTAACCTTTTCCACATTGTTGTATACAAGGTATGCTCAGACAGGAAGCCGAAGATTTCTTCATGCGGACGGAAAGCA ACTATTAGGCAATTCTATGCTGTTATATTACCATCACTTCAGCGTCTTCATGGTGATACAAAGGAGCCGGACGTAACTCAGGAAGAAGGCCACTTCCTGG AGATGATTGTCAAGAACAGACTAGAAGATAGGAGGAAGCTTTCAGATGTAGACCTGCTGAGGGAAGACGAATGTGGGATCTGCTTGGAACCTTGCACAAA AATGGTTGTGCCAAGCTGCTGCCATGCAATGTGTATCAACTGCTACCATGAATGGAACACAAGGTCAGAATCTTGCCCATTTTGTCGAGGCAGTCTGAAG AGAGTAAATTCAGAAGATCTTTGGGTTCTCACTTGCAGTAGTGATGTGGTTGACACTAACACCGTATTAAAGGAAGATATCTTGAGGTTCTATCTTTATA TAAACAACTTGCCAAAAGATATCCCGGATGATCTATTCCTAATGTATTATGAGCACCTAATCTAA
AA sequence Show only first row Show all	>Potri.012G093300.1 pacid=42783504 polypeptide=Potri.012G093300.1.p locus=Potri.012G093300 ID=Potri.012G093300.1.v4.1 annot-version=v4.1 MMEYLELAAMSSYKDSLKVLEADIQHANVLAASIPRAKSGSCLQMKLVYNHLAPIFLFLLQWMDCSCTCLLSTYFNLFHIVVYKVCSDRKPKISSCGRKA TIRQFYAVILPSLQRLHGDTKEPDVTQEEGHFLEMIVKNRLEDRRKLSDVDLLREDECGICLEPCTKMVVPSCCHAMCINCYHEWNTRSESCPFCRGSLK RVNSEDLWVLTCSSDVVDTNTVLKEDILRFYLYINNLPKDIPDDLFLMYYEHLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24440			RING/U-box superfamily protein...		Potri.012G093300 [exp]	0	1
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	1.00	0.9515
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.008G071700 [exp]	5.00	0.9217
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	5.65	0.9442
AT2G22590			UDP-Glycosyltransferase superf...		Potri.012G034100 [exp]	6.78	0.9131
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.007G020200 [exp]	8.48	0.9378
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	9.00	0.9425
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G002900 [exp]	10.00	0.9399
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	12.68	0.9239
AT1G34300			lectin protein kinase family p...		Potri.016G102900 [exp]	14.14	0.9395
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437000 [exp]	14.24	0.9384

Compare expression of checked genes

Potri.012G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.