Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24820 680 / 0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) AT3G61140 84 / 1e-17 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090900 [exp] 756 / 0 AT4G24820 671 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014789 [exp] 734 / 0 AT4G24820 691 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10027348 [exp] 726 / 0 AT4G24820 698 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10017932 [exp] 704 / 0 AT4G24820 660 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10014916 [exp] 647 / 0 AT4G24820 619 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0020 [poplar] [flax] TPR PF10602 [poplar] [flax] RPN7 26S proteasome subunit RPN7
Representative CDS sequence Show only first row Show all	>Potri.012G093500.3 pacid=42783012 polypeptide=Potri.012G093500.3.p locus=Potri.012G093500 ID=Potri.012G093500.3.v4.1 annot-version=v4.1 ATGGAAAACCAAGAGGGAACTCAGCAACCGCATCTCGCCCTCGCTCACAAGCTGTTCCTTTTGACTCACCATGACGTCCAAGATATCGAGAAGGTCCGCT TGAAAGAGGAGGTTTTGACCGCTATCAAATCTGACGATATGGTTCCTTTGTACGAAACCCTAGTGGCGGAGTCATTGCTAGAGAAAGATCAGAGTCTTTT GGATTCAGTGCGAGCTAAGAATGAAGACGAGCTTAACAAGCTCGATGAGAAGATTGCTGATGCTGAAGAAAACTTAGGTGAAAGTGAAGTTCGAGAAGCT CATTTAGCTAAGTCCTTGTTCTACATTAGGATTGGTGACAAGGATAAAGCATTGGAACAACTCAAGGTGACAGAAGGCAAAACAGTTGCAGTTGGGCAAA GGATGGACTTGGTGTTCTATACTTTACAGCTTGGCTTTTTCTGCATGGATTTTGATCTCATTTCCAAGAGCATTGACAAAGCAAAGAACTTGTTTGAAGA GGGAGGTGATTGGGAAAGGAAGAACCGTTTAAAGGTTTATGAAGGCTTGTATTGCTTGTCCACTAGAAATTTCAAGAAGGCAGCCGATTTATTTTTAGAT TCTATTTCAACCTTCACTACATATGAACTTTTTCCATATGACACCTTCATATTTTATACTGTCCTTACAAGCATTATATCACTGGATAGAGTTTCCCTCA AGCAAAAGGTGGTGGATGCTCCTGAGATCTTGACAGTGATCGGGAAAATCCCACATCTTTCAGAGTTTTTGAACTCTCTGTATGATTGTCAATATAAATC ATTTTTCTCAGCATTTGCTGGCCTGACCGAGCAAATTAAACTGGACCGCTATTTGCATCCACACTTCCGATATTACATGAGGGAGGTCAGAACTGTTGTC TATTCCCAGTTCTTGGAATCCTACAAGAGTGTTACCATTGAAGCAATGGCCAAGGCTTTTGGGGTGACAGTGGAGTTCATTGATCTGGAACTATCACGTT TCATTGCAGCAGGGAAGCTTCACTGCAAGATTGATAAGGTTGCGGGTGTTCTTGAAACCAACCGCCCTGATGCAAAGAACGCTCTCTACCAAGCAACTAT CAAGCAAGGGGACTTCTTATTAAACCGGATCCAGAAGCTGTCACGTGTGATTGATCTTTGA
AA sequence Show only first row Show all	>Potri.012G093500.3 pacid=42783012 polypeptide=Potri.012G093500.3.p locus=Potri.012G093500 ID=Potri.012G093500.3.v4.1 annot-version=v4.1 MENQEGTQQPHLALAHKLFLLTHHDVQDIEKVRLKEEVLTAIKSDDMVPLYETLVAESLLEKDQSLLDSVRAKNEDELNKLDEKIADAEENLGESEVREA HLAKSLFYIRIGDKDKALEQLKVTEGKTVAVGQRMDLVFYTLQLGFFCMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCLSTRNFKKAADLFLD SISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVV YSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	1.41	0.8379	RPT4.2
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	2.00	0.8162
AT3G25545			unknown protein		Potri.010G134600 [exp]	2.44	0.8241
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	3.00	0.7832	ATS9.2
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	3.87	0.8200
AT5G08060			unknown protein		Potri.004G123700 [exp]	3.87	0.8023
AT1G08220			unknown protein		Potri.009G002000 [exp]	4.58	0.7994
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	7.48	0.7839
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	7.54	0.7477
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	7.74	0.7654

Compare expression of checked genes

Potri.012G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.