Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63310 282 / 1e-96 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT4G11010 180 / 2e-56 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G09320 175 / 2e-55 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT4G23900 174 / 2e-54 Nucleoside diphosphate kinase family protein (.1) AT4G23895 173 / 2e-51 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT1G17410 86 / 3e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138800 [exp] 181 / 4e-58 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 180 / 1e-57 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.001G091001 [exp] 179 / 6e-56 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 177 / 1e-55 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 84 / 8e-20 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014787 [exp] 303 / 9e-105 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10017931 [exp] 300 / 2e-103 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10024286 [exp] 178 / 1e-56 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 178 / 2e-56 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10003878 [exp] 176 / 9e-55 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10001824 [exp] 175 / 2e-54 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 172 / 2e-54 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10023076 [exp] 96 / 2e-23 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [poplar] [flax] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Potri.012G093800.1 pacid=42783383 polypeptide=Potri.012G093800.1.p locus=Potri.012G093800 ID=Potri.012G093800.1.v4.1 annot-version=v4.1 ATGGAGAGTGTAGCCGTGTTTGGTGGAGCCAAATTTTGTATCTCTTCTTCAACCATCCTTCCTTCATCAACTTACACCACCAACACCACAGCCTTATCCC TCACTTCCTGCAATAACCTTAACCTACGCACAACCCACCTATCTGCATTCCATTCAAAATCCCATCTTTTCTCTTTCAACAATTCCCCTTCACATCCTCA TGCTACTAAAACTCGCAACTCTAGAAAGCCCCGCATATTTCTTCCTCATTTGGTGGCTTCCATGGAACAAGTTGATGAGACTTACATTATGGTCAAGCCT GATGGTGTTCAACGTGGCCTTGTTGGAGAAATAATCTCGAGGTTTGAGAAGAAAGGATTTAAACTGACTGGTTTGAAGCTCTTCCAATGCCCTAAAGAAT TGGCAGAGGAGCACTATAAGGATCTCAAGGCCAAGCCTTTCTTCCCTGGTCTGATCGATTACATCACTTCTGGTCCAGTTGTGTGTATGGCATGGGAAGG TGTTGGGGTTGTAGCATCAGCACGTAAGCTAATAGGGTCCACGGATCCTCTTAAGGCCGAACCAGGCACAATACGAGGAGATCTCGCTGTTCAAACAGGA AGGAATGTGGTTCATGGCAGTGACAGCCCTGAAAATGGAAAGCGTGAAATAGGACTCTGGTTTAAAGAAGGTGAATTATGTCAGTGGACACCAGCTCAGG CACCTTGGCTACGGGAGTGA
AA sequence Show only first row Show all	>Potri.012G093800.1 pacid=42783383 polypeptide=Potri.012G093800.1.p locus=Potri.012G093800 ID=Potri.012G093800.1.v4.1 annot-version=v4.1 MESVAVFGGAKFCISSSTILPSSTYTTNTTALSLTSCNNLNLRTTHLSAFHSKSHLFSFNNSPSHPHATKTRNSRKPRIFLPHLVASMEQVDETYIMVKP DGVQRGLVGEIISRFEKKGFKLTGLKLFQCPKELAEEHYKDLKAKPFFPGLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLKAEPGTIRGDLAVQTG RNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAPWLRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	0	1
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.001G060200 [exp]	1.00	0.9594
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	5.91	0.9407	Pt-GSA1.1
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	8.12	0.9562	Pt-RPL21.3
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Potri.005G089600 [exp]	9.21	0.9335
AT2G44640			unknown protein		Potri.014G044200 [exp]	10.39	0.9208
					Potri.001G230200 [exp]	11.53	0.9401
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.019G054400 [exp]	12.80	0.9146
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	13.26	0.9418
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	17.97	0.9302
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Potri.016G113700 [exp]	18.81	0.9402	Pt-PSRP4.1

Compare expression of checked genes

Potri.012G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.