Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50350 233 / 3e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091500 [exp] 696 / 0 AT5G50350 229 / 1e-67 unknown protein Potri.008G012000 [exp] 98 / 2e-21 AT5G50350 54 / 3e-07 unknown protein Potri.010G247100 [exp] 92 / 2e-19 AT5G50350 55 / 1e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034861 [exp] 100 / 4e-22 AT5G50350 58 / 1e-08 unknown protein Lus10033401 [exp] 92 / 2e-19 AT5G50350 57 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G094200.1 pacid=42783370 polypeptide=Potri.012G094200.1.p locus=Potri.012G094200 ID=Potri.012G094200.1.v4.1 annot-version=v4.1 ATGGCAACCTCGGCGTTCAAATCCACGACAAAGAGAGCACCAATCGGCAACGACAAGAACGACGGGCCGTCTGCCTCTGCTCACCGGCGGTCAAGGAGTC TCAGCCGGTTCTCCCGACCTATTCCATCCAACTTCTCCGACGATGCTCCGGTGCCGTCGAGAGGGAGGTTCGTGAACACGGAGAGAGGATCGGGAGTCCC GGATATGAGTCTTGACGATCTCGCTATTCAGTTGTTCAGTTCAGGTGATCGAGGGAGGTCTTCGGGTTTTAGAAGTGGTGACGTCAGCGATGGGGAGAGA GTTGTGAGTGGGTCCCAAAGGAGAGGGAGGTCTGTGTCGAGGCAAGACAGTGAAAGTAATAGTAACAGTAAGAGTTACAGTGGTGGTGCGAAGGGGAATT CAGACGGTAATAATTCGAGGAGAAGACGTTCTGTTTCTGTGGTTAGATATCAAATTAGTGATTCTGAGAGTGATCTAGATCATTCTCAGAATTCAAGAAA TCATGCTAATCCGAGGCGTCACAGTAATGGAAACAACCAGGTCCCTTTATCAAATAAGACACTGGCTTCAAATCATAGACCTGGACTGAGAAGGTCTCTT AGCCAGAAAGATTTAAAGTATCATGATGGCTACTCGAGCCATTCATCAAGCCTAACTGATGATGAAGGAAAGGATGCTTCTTCCAATAAACACGGATTTG AGAGAACGATAAGGACAGTTTATGCACAGAAGAAGGCAGAGCATCCCACCGGTGAGGATATGAATAGTGGGCTGTATGAAGCAATGAGAAAAGAACTTAG GCATGCAGTTGAAGAGATCAAGATGGAGCTTGAACATTCTAGGGGAAAAACAAATGCAGACTGCTTGCAATCTGGAAAGTCTAATGTTTTTCAGGCTGGT TCTACTATCAGAAGGAATCATGCAGCAAAATCAGAACAGTCCGAGAAGCGTAAACAAGACCTATTAGCAAAACTACTGTTGGAGGAGCAACATGGTAGAG ATATCTCGAAGATTGTGAAAGAATTGCTTTCTGATCCGAAGAACACTGTGGTAGAAAAGCCATCACGAGCCCGAAAGAGGAGTAATGACAGAAGTAGGAT GTCTAAACGATTGACTGAAGAGGCAGAGAAATACTTTGAGGACTTCATTACAAATGTTGAAGATACAGATATTTCATCTTTGGATGGGGAGAGGAGTGAT ACAAGCTCAACCTTGGGAGGAATAACAAAGACAGAAACTTTTCGAAGCCCAGTGATATCCAAGTCTCGACCTGTAGAAATGGATGGGGTTGCTCTGCCCT GGTTACAATGGGAAACTTCTAATGATGCTTCTCCTCTATCCATAAAAAATAAGGAGCTACCATCAACTCCAAAAAGTAATTTATGGGATGCTGTACAGGA AGCAACGCCTGTTCAAGATTTAAGCATGCACTCCATCAGTAGCCATGGAAGCTGGAGCCCAGGACTTGCAGATGGCCATTCAACAAATATTAACGAACTT GAAGGGACTAAATTTGGAGAACTTGAAAGCTACAAAAGCCAAATTTTGTCCGGAAGAACAAGGTCACAGTTTGATGTTGACGAGTATCTGAAGCGTCCAA GTGATGAAGATTTTCTCTTTGAAAGATGGAAGCAACAACAGAGAATTCATTCAGGTGGTCTCCTGCTCTGTAACCAAATGTTTTTCTAG
AA sequence Show only first row Show all	>Potri.012G094200.1 pacid=42783370 polypeptide=Potri.012G094200.1.p locus=Potri.012G094200 ID=Potri.012G094200.1.v4.1 annot-version=v4.1 MATSAFKSTTKRAPIGNDKNDGPSASAHRRSRSLSRFSRPIPSNFSDDAPVPSRGRFVNTERGSGVPDMSLDDLAIQLFSSGDRGRSSGFRSGDVSDGER VVSGSQRRGRSVSRQDSESNSNSKSYSGGAKGNSDGNNSRRRRSVSVVRYQISDSESDLDHSQNSRNHANPRRHSNGNNQVPLSNKTLASNHRPGLRRSL SQKDLKYHDGYSSHSSSLTDDEGKDASSNKHGFERTIRTVYAQKKAEHPTGEDMNSGLYEAMRKELRHAVEEIKMELEHSRGKTNADCLQSGKSNVFQAG STIRRNHAAKSEQSEKRKQDLLAKLLLEEQHGRDISKIVKELLSDPKNTVVEKPSRARKRSNDRSRMSKRLTEEAEKYFEDFITNVEDTDISSLDGERSD TSSTLGGITKTETFRSPVISKSRPVEMDGVALPWLQWETSNDASPLSIKNKELPSTPKSNLWDAVQEATPVQDLSMHSISSHGSWSPGLADGHSTNINEL EGTKFGELESYKSQILSGRTRSQFDVDEYLKRPSDEDFLFERWKQQQRIHSGGLLLCNQMFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50350			unknown protein		Potri.012G094200 [exp]	0	1
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	12.60	0.6278
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	16.06	0.7009	MYB222
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	18.70	0.6785
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Potri.001G231800 [exp]	18.97	0.6251	Pt-CPSF100.2
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	19.28	0.6857
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	22.80	0.6859
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	29.46	0.6877
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	37.37	0.6776
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	44.82	0.6313	Pt-E2F3.1,E2Fa_1
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	50.89	0.6725

Compare expression of checked genes

Potri.012G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.