Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63320 512 / 1e-167 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 363 / 2e-113 GTE8 global transcription factor group E8 (.1.2) AT5G14270 355 / 2e-111 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G01770 272 / 5e-81 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G73150 150 / 1e-38 GTE3 global transcription factor group E3 (.1) AT1G06230 140 / 2e-34 GTE4 global transcription factor group E4 (.1.2.3) AT5G46550 132 / 2e-32 DNA-binding bromodomain-containing protein (.1) AT1G17790 130 / 8e-32 DNA-binding bromodomain-containing protein (.1) AT5G65630 119 / 8e-28 GTE7 global transcription factor group E7 (.1) AT5G10550 113 / 1e-25 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091800 [exp] 1055 / 0 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 504 / 3e-168 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.013G118900 [exp] 174 / 1e-45 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 170 / 5e-45 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.019G090700 [exp] 170 / 5e-44 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.009G080000 [exp] 166 / 9e-44 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.011G096400 [exp] 150 / 2e-38 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G355300 [exp] 138 / 5e-34 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 135 / 4e-33 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014609 [exp] 413 / 3e-133 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 352 / 3e-109 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10033624 [exp] 186 / 6e-49 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 182 / 1e-47 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 181 / 2e-47 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10011989 [exp] 135 / 4e-33 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10007096 [exp] 134 / 1e-32 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 128 / 3e-32 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10002784 [exp] 131 / 6e-32 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10034067 [exp] 127 / 3e-30 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.012G094300.1 pacid=42783431 polypeptide=Potri.012G094300.1.p locus=Potri.012G094300 ID=Potri.012G094300.1.v4.1 annot-version=v4.1 ATGGCACCTACTGTTCCTATAGAGTTTATTGGACAGAAGGAATTGAAAACGTGTTGGCTTTCACAACCAATGGGGAAATCAAGGAAGTTCTCTAAAGGGC ACTCCTCTGGATTTGTTCCAGATTACCGGCATGCTGCTGAGACCATGGCTGAATCAGAAGGGTTTGGGAGCTCTGGACGTGTTGACACCGAGATGACAGC ATCAGGAGATTCCTTTGCTCCCAAGAGGAAGTGCATTAGTTTGAATGTGGACGGGTATGATACATTTGGTGTACCATCACAAATCCTGTCATTGTCTAAG ATGTCAAGACCGGAGAGGAAGGATTTGGAAATTAGGTTGAAAAATGACCTTGAACAAGTCAGAATCCTCCATAGGAAAGTGGCTTCTTTGAGTTCAAATA CAGTTCTGTTATCGCCCTCTAGTGATACTCGGAGTTGCAGTGATGGCCAAAAGAGGCTTCCTCTAGAAGGTGTCCACAGGTCATTTGAAGTATCAGCTCC CAAGAGTAAGAAACGGGCTCCTCCAGGTCGAAATGGGGCTCGATCAAAAAAGGGTACATCAGGGCGTTTTGAGCCAGTGAAGTCAGCTGCTCCACTTGGT ATAACTAATGCTATGTTGATGAAACAGTGTGAAACATTACTAAATCGTTTGATGACACATCAGTTTGGTTGGATTTTCAATACTCCTGTTGATGTGGTGA AAATGAACATACCAGACTACTTCACTATCATTAAACACCCAATGGATTTGGGTACAGTGAAGAGCAGGATTATTTCTGGTGAATATTCAAGTCCATTGGG ATTTGCTGCAGATGTGCGACTTACTTTCGCAAATGCAATGAAGTATAACCCCCCTGGAAATGATTTCCATTTCATGGCCGAGACCCTTAGTAAATTCTTT GAAGTTAGATGGAAAGTTATTGAGAAGAAGATTCCTGTTACCGCTGATGTAGAACCAGTGCCATCAAGAGCTGATGTGCGTATGGAAATGGAAACAACTG CTCATATAGAAAAGGAAACCACTACTGATACTCCACCTTTGAAAAAGAAAAAAATTACACCGAGTGACAATAAGGTCAAACCAGGGCCCATCAGGAAAGT CATGACCAATGAGGAGAGACAGAAGTTGAGCATGGAGTTGGAGGCATTGCTCGCTGAATTGCCTGAAAACATTATTGAATTCCTAAAAGAGCATAGTGGA AATGCTGGCCAGACTGGCGAGGATGAGATTGAGATTGATATTGATGCTCTCGGTGATGATATATTGTTCAACTTACGGAAACTCTTAGATAACTATTTAC TGGAGAAACAGAAAAACCAATCAAAAGTTGAACCATGTGAAATGGAGATTATTAACGAGTCAGGGATTAGCAATTCATCATTGCAACCATGCAAAGGCAA TGATACCGCTGAAGAAGATATAGATATTGTTGGTGGGAATGATCCTCCTATTTCAAGCTACCCTCCAGTAAAGATAGAAAAAGAGGCGGCTCATAAAAAC AGTAAATGTAGCAGTCGAAGTAGCTCCAATAGTGAATCGGGCTCATCTTCAAGTGATTCAGATTCTGGCAGTGAATCTGGTAGTGAATCTGATGCAGTTA AAGCGTCTGGTCCCATTAATGCTACTGAGGAAAAAATGGAACCTGGAGAAAATGTAGTCCAAAAGAGAAGTCATCTTGGTGATCCAGCTGTCAGAAATCA ATCTGTTGATGGGCTGGCCCAAGTTGAGCTGGATACTGAGGGTAAGCCAGTTGCAGCCGAGGCAGATGGCCACCAAGAGGGGGAGAGTGCTCCACCTGAG AGGCAAGTCTCTCCTGAAAAGCTCTATCGTGCAGCTTTGTTGAGGAACCGTTTTGCTGACACCATACTTAAAGCTCGAGAAAAGGCGCTTGAAAAGGGTG AAAAGCGTGATCCTGAGAAATTGCGGAAGGAGAAGGAGGAATTTGAAAGAAGGCAAAAGGAAGAAAAAGCTCGGTTACAGGCAGAAGCTAAGGCTGCTGA AGAGGCTCGGAGGAAAGCTGAAGCTGAAGCTGCCGCCGAAGCCAAAAGGCAGAGGGAACTGGAAAGGGAAGCTGCACGTCAGGCATTGATACAGATGGAA AAGACTGTTGATATCAATGAGAACTGTCAGTTTATGGAAGACTTAGAAATGCTTAGGATTGCCCATCATGATGAACAGCTTCCAAGTTTCATAGAGGAAA CAAGCCCTGATCATTCTCAAAATGGGCTGGGTAGTTTCAAGCTTCAGGGTAGCAACCCACTAGAGCAACTAGGATTATACATGAAGGAAGATGACGAAGA CGAAGAGGAAGTAGTTGAACAACCCTCTAGTGTTCCAGATCTAACGAAAGATGTTGAGGAGGGAGAAATTGATTGA
AA sequence Show only first row Show all	>Potri.012G094300.1 pacid=42783431 polypeptide=Potri.012G094300.1.p locus=Potri.012G094300 ID=Potri.012G094300.1.v4.1 annot-version=v4.1 MAPTVPIEFIGQKELKTCWLSQPMGKSRKFSKGHSSGFVPDYRHAAETMAESEGFGSSGRVDTEMTASGDSFAPKRKCISLNVDGYDTFGVPSQILSLSK MSRPERKDLEIRLKNDLEQVRILHRKVASLSSNTVLLSPSSDTRSCSDGQKRLPLEGVHRSFEVSAPKSKKRAPPGRNGARSKKGTSGRFEPVKSAAPLG ITNAMLMKQCETLLNRLMTHQFGWIFNTPVDVVKMNIPDYFTIIKHPMDLGTVKSRIISGEYSSPLGFAADVRLTFANAMKYNPPGNDFHFMAETLSKFF EVRWKVIEKKIPVTADVEPVPSRADVRMEMETTAHIEKETTTDTPPLKKKKITPSDNKVKPGPIRKVMTNEERQKLSMELEALLAELPENIIEFLKEHSG NAGQTGEDEIEIDIDALGDDILFNLRKLLDNYLLEKQKNQSKVEPCEMEIINESGISNSSLQPCKGNDTAEEDIDIVGGNDPPISSYPPVKIEKEAAHKN SKCSSRSSSNSESGSSSSDSDSGSESGSESDAVKASGPINATEEKMEPGENVVQKRSHLGDPAVRNQSVDGLAQVELDTEGKPVAAEADGHQEGESAPPE RQVSPEKLYRAALLRNRFADTILKAREKALEKGEKRDPEKLRKEKEEFERRQKEEKARLQAEAKAAEEARRKAEAEAAAEAKRQRELEREAARQALIQME KTVDINENCQFMEDLEMLRIAHHDEQLPSFIEETSPDHSQNGLGSFKLQGSNPLEQLGLYMKEDDEDEEEVVEQPSSVPDLTKDVEEGEID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	1.73	0.9358
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	1.73	0.9233
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	2.23	0.9148
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	2.82	0.9249	Pt-LD.2
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	3.31	0.8977
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	3.46	0.9231
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	3.74	0.9115
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	4.35	0.8826
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	5.65	0.9102
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	6.00	0.8959

Compare expression of checked genes

Potri.012G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.