Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 573 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 512 / 2e-175 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G20930 268 / 9e-85 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT5G10270 271 / 1e-83 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 270 / 6e-83 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G76540 257 / 1e-80 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 251 / 9e-79 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G38620 244 / 2e-75 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G18040 242 / 1e-73 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G71530 242 / 4e-73 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092100 [exp] 1052 / 0 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G056900 [exp] 593 / 0 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 573 / 0 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G133500 [exp] 268 / 5e-85 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G024600 [exp] 270 / 4e-83 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G003700 [exp] 261 / 1e-79 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.002G003400 [exp] 253 / 1e-78 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.012G103900 [exp] 260 / 2e-78 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.005G257500 [exp] 249 / 1e-77 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015816 [exp] 557 / 0 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 551 / 0 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 280 / 7e-87 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 274 / 1e-84 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 277 / 2e-81 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 259 / 4e-78 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10040593 [exp] 246 / 3e-76 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 242 / 8e-75 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 240 / 1e-74 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10035892 [exp] 249 / 2e-74 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G094600.8 pacid=42783850 polypeptide=Potri.012G094600.8.p locus=Potri.012G094600 ID=Potri.012G094600.8.v4.1 annot-version=v4.1 ATGGCGGCAGGGCGGCTCGATGTGTCCAGGAGGCGGGGTGGTGGTGGTTATTTTGATGAGGTGAAGCGGGGTGGTGATCGTGGTTTGGTACGGAAAAATG GGTATCATAGTTCAACGATTGTGCCTAGTTTTGATTTTAGACGAAGTGGGTTTAGTTGTAGAGATGAAGAACGACAGTCAGGGGAGCCGTGGCAATTTAA TGCCTTCTGTTCCTCGAAGTATGAGGAAGGTGAGATACCAGCAAATGAAGATGGGGTTCAATTGCCCGCAGAGAAGAAAAGGAAGTTTTCTCCTATTGTA TGGGATGTTGAGGAGAAAAAAGCGAAGATTTCTTCAAAGAATAGAGTTGTTCAGGGGAGTAGTACTCGGGATTTAAATGTTGTTTCAGACGAGGATGTTG TGAAAAGTCCTGTCAAAGGAGGATTGGAGCTTGTGGTGGACAAGGATTGTGTGGATGGAGGATCAGCTGATGGTATTGGATCTGAGTATCCAGCGCCTTT GTCTCCTTCATTGCATCCAAAGAAAGATGGGGGTTATGACCAAGAGCAGGGACAAGTGGAGGAGGAAGAGCTTCCTGAAGCACGGAATATAGCCATGTCC CGGTGGGCTTCTGATGATGATTCTCCAAGGGATACCACTTTGATTGATGATAAAGGAATGCATGGAGAAATGGTGTACAGGACAGATTTGATTAATAGAG AAGGGTTCCAGAGAGAAGTCTCAGATAGAGATGGATCAAGTTCATCTCTATCGGATGAAAGAGGTTACAGTGGCAGCTCTGCTTCGGAATATGAATTGCA AAATGATGTCATGGACATTGATGATATTAGGGATGAAAATGCCAGTGATAATGAGATGGAGCAAGCCGCTGGTGAAGAGCCCACAGTTACTAACCAAAGG GGGTTTAATATGCTAGAGGGTTGTAGAAGTGTGTTCGAGTATGAAAGACTCAATGAAATCAATGAAGGAACCTATGGTAAAGTGTACAAAGCCAGGGATA AGAAGACTGGAGAATTTGTGGCTTTGAAGAAAGTGAAGATGAATGTCGGAAGAGACAAATACTTGGAAGAGTATGGTTTCCCCTTGACATCTTTGAGGGA GATTAACATTCTTATGTCTTTTGATCACCCTTCAATTGTGAGAGTTAAAGAAGTTGTGATGGGGGACCTTGATAGTGTCTTCATGGTGATGGAGTACATG GAACATGATCTCAAGGGGCTGATGCAAGCGATGAAGCAGCCTTTCAGTACAAGTGAAGTCAAATGCTTAATGCTACAGCTTTTGGAAGGTGTCAAATATC TTCATGATAATTGGGTGCTTCACAGGGATTTGAAGACATCAAACCTTCTTTTCAATAACCAGGGAGAGTTGAAAGTATGTGATTTTGGGATGTCACGCCA GTATGGTAGCCCATTGAAGCCATATACCTCTCTGGTGGTTACTTTGTGGTACAGGGCACCAGAACTTCTTCTTGGAGCAAAGAAATACTCTACAGCAGTT GATATGTGGTCAGTGGGTTGCATAATGGCTGAAATGTTGACCAAGGAACCCCTATTCACAGGGAAAGGTGAAATTGATCAGCTTGACAAGATCTTCAAAA CTCTTGGCACACCAAACGAGACTATTTGGCCTGGGTTATCAAAATTGCCAGGGGCAAAAGCAAATTTTGTTCAGCAACCGTATAATCAATTACGGAAGAA GTTTCCTTTCACACCTTTCACAGGATCTCCAGTTCTCTCTGACTCAGGATTTGACTTGCTAAACAGACTCCTAACTTATGAGCCAGATAAGCGAATAACA GCAGACGACGCTCTTAATCATCCCTGGTTTAATGAGGTCCCACTATCAAAATCAAAAGAATTCATGCCTACTTTCCCTCCTCAGTATGCAAAGAACAGGT AG
AA sequence Show only first row Show all	>Potri.012G094600.8 pacid=42783850 polypeptide=Potri.012G094600.8.p locus=Potri.012G094600 ID=Potri.012G094600.8.v4.1 annot-version=v4.1 MAAGRLDVSRRRGGGGYFDEVKRGGDRGLVRKNGYHSSTIVPSFDFRRSGFSCRDEERQSGEPWQFNAFCSSKYEEGEIPANEDGVQLPAEKKRKFSPIV WDVEEKKAKISSKNRVVQGSSTRDLNVVSDEDVVKSPVKGGLELVVDKDCVDGGSADGIGSEYPAPLSPSLHPKKDGGYDQEQGQVEEEELPEARNIAMS RWASDDDSPRDTTLIDDKGMHGEMVYRTDLINREGFQREVSDRDGSSSSLSDERGYSGSSASEYELQNDVMDIDDIRDENASDNEMEQAAGEEPTVTNQR GFNMLEGCRSVFEYERLNEINEGTYGKVYKARDKKTGEFVALKKVKMNVGRDKYLEEYGFPLTSLREINILMSFDHPSIVRVKEVVMGDLDSVFMVMEYM EHDLKGLMQAMKQPFSTSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLFNNQGELKVCDFGMSRQYGSPLKPYTSLVVTLWYRAPELLLGAKKYSTAV DMWSVGCIMAEMLTKEPLFTGKGEIDQLDKIFKTLGTPNETIWPGLSKLPGAKANFVQQPYNQLRKKFPFTPFTGSPVLSDSGFDLLNRLLTYEPDKRIT ADDALNHPWFNEVPLSKSKEFMPTFPPQYAKNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	0	1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G084500 [exp]	1.73	0.7780
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014352 [exp]	4.69	0.7685
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	5.65	0.7585
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	6.92	0.7627
AT3G59090			unknown protein		Potri.002G058500 [exp]	6.92	0.6798
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.003G074400 [exp]	7.54	0.6670
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	7.93	0.6652
					Potri.005G247051 [exp]	11.66	0.6696
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	12.44	0.7529
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	12.72	0.7353

Compare expression of checked genes

Potri.012G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.