Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 417 / 1e-143 Protein of unknown function (DUF3537) (.1) AT3G20300 196 / 7e-58 Protein of unknown function (DUF3537) (.1) AT1G50630 174 / 3e-49 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT2G21080 164 / 4e-46 unknown protein AT4G22270 164 / 9e-46 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 155 / 2e-42 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092200 [exp] 729 / 0 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 459 / 4e-160 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 189 / 3e-55 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 179 / 3e-51 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 172 / 2e-48 AT2G21080 447 / 9e-156 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043011 [exp] 474 / 4e-166 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 426 / 9e-147 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 372 / 9e-127 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 355 / 4e-119 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 204 / 2e-60 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 201 / 9e-60 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 203 / 1e-58 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 186 / 1e-53 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 177 / 2e-50 AT2G21080 450 / 5e-157 unknown protein Lus10032512 [exp] 115 / 4e-31 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [poplar] [flax] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Potri.012G094700.1 pacid=42782749 polypeptide=Potri.012G094700.1.p locus=Potri.012G094700 ID=Potri.012G094700.1.v4.1 annot-version=v4.1 ATGGCAGTTCCTTGCTCGCAAACAGATGACTTGGTATCAACAACACAAGTCCCTCTCATATATGAAGACCAAGAAGATGAAGCCCATCTCTCAAAATCTC TAAACCATTTAGAAACCATTTTAAGGGTCTTTGGCTTTTGTCAACAATCCTTTATAAGTCTCACTCTCTCATGGCTCTCTTTTTTGCTTCTTGGTATTGC TCTTCCTGTTGTGATGATCCATTATCTCTCTTACTGCACTACTGACTGTAAGAAGTACCAAATTCGTACCTTTGAGATTCAGGTTTTGGTGTTTCAGTGT CTGGTTGCTGCCATTTCTCTTGTTTGTATTTCACATAACTTGAGGAAGTATGGGTTCAGGAAGTTTCTTTTTGTGGACCGCTATCATGGACATATGGCGC AGTTTCGTGATGAATATGTGAAGAAGATTAATGGTTTCTTCCGCTTGTTGGCAGTATGGGTGATACCATTCCTCCTCCTGAAGATTGTTCGCGAGGCTGT TCGCATTATATATGTGCCACACCATTCTTGGAGGCAATCTGTTGCGATACTGATAGCTTCGATTGTCTCATGGACCTATTCAATCACTATCTATTTATCA GGCTGTGCTTTATTCAATTTAGTATGCAATTTTCAAGTGATTCACTTTGAAAATTACGGGAAGCTCTTAGAAAGGGATATGGATGTTTCACAGTACATTG AGGAACACATTCGTCTAACACATTATCTATCTAAGATAAGCCATAGGTTCCGAATTTTTTTCATTCTTGAGCTCTTGGTTGTGACAGCGAGTCAGGTCGT GGCTTTATTTCAAACTACATGGAATAGTGAAATTATCAATTTCATCAATGGTGGTGATTTTGTGATCTCTTCTATAGTTGAGCTTGTTGGTTTAATAATT TGCCTGCATGCTGCTGCAAAAATCACACATAGAGCACAAGGCACTGGATCAGTTGCTGCTAAATGGCATTCTATAGTTACATGTGCCTCTGATGACACTT CTCAAGTGGAAATAAGCAGCAATTGTGGAAGCTCGGAGGCTGCCAATACAGGCCATTTATTGCGCATAAATTATTCAGAAAGTGATTTGGAGGCAGTTGA CTATGTGCCAGTGCCAACTACTACCCAGTTGGCTTCATATATGTCAACATATCACAAGAGACAAGCTTTTGTGACGTATTTGCAGTCCAATCCTGGTGGG TTTAGTGTTTTTGGATGGACAATTGACCGGACACTCATCATCACTATCTTCTTTTTGGAGATGTCGCTGGTTCTTTTTGTACTTGGGAAGACCATAACCA TCTATCATTCGTAA
AA sequence Show only first row Show all	>Potri.012G094700.1 pacid=42782749 polypeptide=Potri.012G094700.1.p locus=Potri.012G094700 ID=Potri.012G094700.1.v4.1 annot-version=v4.1 MAVPCSQTDDLVSTTQVPLIYEDQEDEAHLSKSLNHLETILRVFGFCQQSFISLTLSWLSFLLLGIALPVVMIHYLSYCTTDCKKYQIRTFEIQVLVFQC LVAAISLVCISHNLRKYGFRKFLFVDRYHGHMAQFRDEYVKKINGFFRLLAVWVIPFLLLKIVREAVRIIYVPHHSWRQSVAILIASIVSWTYSITIYLS GCALFNLVCNFQVIHFENYGKLLERDMDVSQYIEEHIRLTHYLSKISHRFRIFFILELLVVTASQVVALFQTTWNSEIINFINGGDFVISSIVELVGLII CLHAAAKITHRAQGTGSVAAKWHSIVTCASDDTSQVEISSNCGSSEAANTGHLLRINYSESDLEAVDYVPVPTTTQLASYMSTYHKRQAFVTYLQSNPGG FSVFGWTIDRTLIITIFFLEMSLVLFVLGKTITIYHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	2.82	0.8608
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	3.31	0.8223
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	3.46	0.8557
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	4.00	0.8560
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	7.00	0.8329	ACT6
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.010G226250 [exp]	8.06	0.8025
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	9.21	0.8435
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.013G041300 [exp]	9.27	0.7629	IAA8.2
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	10.09	0.8373
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.017G130200 [exp]	12.72	0.7771

Compare expression of checked genes

Potri.012G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.