Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 657 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 459 / 4e-157 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 458 / 2e-156 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 441 / 1e-149 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 436 / 8e-148 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 411 / 4e-138 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 389 / 4e-129 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 337 / 3e-109 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 328 / 7e-106 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G51680 308 / 6e-98 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092300 [exp] 865 / 0 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 759 / 0 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 751 / 0 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 599 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 524 / 0 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 459 / 8e-157 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 456 / 2e-155 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 449 / 6e-153 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 449 / 6e-153 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 675 / 0 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 508 / 5e-176 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 422 / 5e-142 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 416 / 8e-140 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 421 / 5e-139 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 401 / 1e-133 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 397 / 4e-132 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 395 / 5e-132 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 389 / 2e-129 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 370 / 3e-122 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G094800.1 pacid=42782881 polypeptide=Potri.012G094800.1.p locus=Potri.012G094800 ID=Potri.012G094800.1.v4.1 annot-version=v4.1 ATGGCAATGGAGTCAATCAACCCAAGAACTGGTTTCTGCCAACAAACCAAAACCTTTCACAGTCTCAGACCACCGACTCCATTTCCACCACCCCATCAGC CTCTCTCCATCACCCATTTCATCCTCTCTCTCCTCCAGTCCTCCACCGTCCCCACCACTACCACCACCTACCTCACCATCCCCTCCACAGGCGAGTCTAT AACTTACTCTCAAGCCATCGACCAAATTCACTCTCTTTCTTCATCTCTCAAGAACCACTACTCTTTAAACAACAAGGACGTTGCTTTTATCCTCTGCCCA CCTTCCCTCCACGTCCCCGTTCTTTATTTATCTCTTATGTACCTCGGTGTCATCATCTCTCCCGCCAATCCGCTGAGTTCAGACTCCGAATTGGCTCACC AATTCCAACTCTGTAAACCCAAGATCGCCTTTGCCACCTCCCAAACTGCCCACAAGCTTCCTTCCCTCCCTCTTGGCACCATCCTCATTGACTCCCCCGA GTTCACCTCCTTGTTGACTCAGCCCAAACCACAAGCCAAACAACCCCGGGTTGAAGTGAGTCAGTCTGACATTGCGGCTATTCTTTACTCCTCAGGCACA ACAGGGCGAGTCAAAGGAGTGGCATTGACTCACCGGAACTTAATCGCTTTAATCTCCGGTTTTCATCACAACATGAAAGAACCCGAACCGAATCAACCTG AGCAACCTCCAGTTTCTCTGTTTATATTGCCTTTGTTTCATGTTTTTGGGTTCTTTATGTCAATAAATGCGTTCTCAAGAGGGGAGACTTTGGTCTTGAT GGAGAGATTTGATTTCGTACAAATGTTGAAACATGTAGAAAAATATAGAGTTACTTACATGCCGGTGTCGCCACCGCTTATTGTGGCGTTTGTGAAATCG GATCTGACTGAGAAGTATGATTTGAGTTCGCTAAGATCACTTGGCTGCGGTGGCGCACCACTAGGGAAGGAGGTTGCTGATAAGTTTAAAGAGAAATTTC CACACGTTGAAATAGTACAGGGATATGGGTTGACTGAGACTGGAGGAGGGGCATCAAGGACTCTAGGACCAGAAGAGACTAGCCAGCATGCTTCTGTCGG TCGCCTGTCTGAAAATATGGAAGCTAAAATTGTTGATCCTGAAACTGGAGAGTCCTTGGGTCCTGGCCAGAGAGGGGAGCTTTGGTTGCGAGGGCCAACT GTCATGAAAGGTTATGTAGGAGATGAGAAGGCAACTGCGGAAACCTTACATCCAGAAGGTTGGTTAAAGACTGGAGATCTTTGTTATTTTGACTCGGACG GGTTCCTTTACATTGTTGATAGGCTAAAGGAGTTGATTAAATACAAGGCATTTCAGGTGCCCCCTGCTGAGTTGGAAAAGTTACTTCAGTCTAATCCTGA AATTGCTGATGCTGCTGTGATTCCGTATCCTGATGAAGAGGCGGGGCAAATACCTATGGCCTATGTGGTGAGGAAACCAGGAAGCAATATTACTGAGGCT CAAATCATGGATTCCATTGCAAAACAGGTTGCACCATACAAGAAGATAAGACGAGTGGACTTCATCAGTGCCATTCCAAAATCTCCCGCAGGAAAGATCC TAAGGCGGGAGCTGGTCAATCATGCTCTCTCTGGTGCTTCGTCTAAATTATGA
AA sequence Show only first row Show all	>Potri.012G094800.1 pacid=42782881 polypeptide=Potri.012G094800.1.p locus=Potri.012G094800 ID=Potri.012G094800.1.v4.1 annot-version=v4.1 MAMESINPRTGFCQQTKTFHSLRPPTPFPPPHQPLSITHFILSLLQSSTVPTTTTTYLTIPSTGESITYSQAIDQIHSLSSSLKNHYSLNNKDVAFILCP PSLHVPVLYLSLMYLGVIISPANPLSSDSELAHQFQLCKPKIAFATSQTAHKLPSLPLGTILIDSPEFTSLLTQPKPQAKQPRVEVSQSDIAAILYSSGT TGRVKGVALTHRNLIALISGFHHNMKEPEPNQPEQPPVSLFILPLFHVFGFFMSINAFSRGETLVLMERFDFVQMLKHVEKYRVTYMPVSPPLIVAFVKS DLTEKYDLSSLRSLGCGGAPLGKEVADKFKEKFPHVEIVQGYGLTETGGGASRTLGPEETSQHASVGRLSENMEAKIVDPETGESLGPGQRGELWLRGPT VMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAFQVPPAELEKLLQSNPEIADAAVIPYPDEEAGQIPMAYVVRKPGSNITEA QIMDSIAKQVAPYKKIRRVDFISAIPKSPAGKILRRELVNHALSGASSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	1.00	0.9147
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	1.41	0.9074
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	5.19	0.9039
AT1G18390			Protein kinase superfamily pro...		Potri.015G044750 [exp]	7.34	0.8745
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203000 [exp]	13.03	0.8592
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.008G127600 [exp]	14.07	0.8585
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	15.74	0.8931
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Potri.006G148800 [exp]	15.93	0.8134
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.012G043800 [exp]	20.00	0.8268	ATLCB1.3
AT1G18900			Pentatricopeptide repeat (PPR)...		Potri.015G066400 [exp]	22.24	0.8424

Compare expression of checked genes

Potri.012G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.