Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 604 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 437 / 2e-148 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 426 / 9e-144 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 419 / 4e-141 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 404 / 7e-135 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 390 / 7e-130 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 356 / 2e-116 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 318 / 1e-101 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 315 / 1e-100 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G51680 301 / 4e-95 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095000 [exp] 1038 / 0 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 760 / 0 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 705 / 0 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 555 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 494 / 2e-170 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 421 / 2e-141 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 419 / 9e-141 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 407 / 2e-136 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 402 / 2e-134 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 605 / 0 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 468 / 3e-160 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 400 / 2e-133 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 396 / 9e-132 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 394 / 1e-128 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 387 / 6e-128 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 381 / 3e-126 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 380 / 7e-126 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10038667 [exp] 374 / 4e-123 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 355 / 3e-116 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G094900.1 pacid=42784048 polypeptide=Potri.012G094900.1.p locus=Potri.012G094900 ID=Potri.012G094900.1.v4.1 annot-version=v4.1 ATGGCCACAAAGTCGGTGCCGGCACAAGAAACCACCATGACCACCCATGCAATCAATATTACAAAAGGTGGTTACTGCTTGGAAAGTAAAACCTTTCAAA GTCTGATACCACCTGCTACTCCACCACCACCGCATCAACCTCTCTCCATAACCCAATTCATCCTTTCTCTCCTCCACTCCTCTGCCATCCCAACCACCCA AAAAAACTACCTTATCATGCCCTCCACAGGTCAATCTCTCACTTACTCTCAATCCATCAACCAGATTTACTCTCTTTCTTCATCTCTCAAGAGTCTCTAC AATTTAAACAAGAACGATGTCTCTTTTATCCTCTGCCCGCCCTCTCTCCACGTCCCCATTATTTATCTCTCTCTTCTTTACCTTGGTGTCACTATCTCTC CTGCCAACCCCCTAAGTTCGAACTCCGAGCTGACTCACCAAATCCAACTCAGCAAACCCAAGATCGCATTTGCTACTTCCCAAACTGCCCACAAGCTTCC ATCTTTTCCCCTTGGCACAATCCTCATTGACTCCCCTGAGTTCATCTCCTTGTTGACTCAAATCTCCAAACGAGACAGTGCTACCAACCACGTTGAAGTG AGTCAATCCGACATGGCAGCGATCCTATATTCCTCGGGAACAACTGGGAGAGTCAAAGGCGTGTCATTGACTCACAGGAACGTAATAGCTTCAATCGCGG CTTTTCAAATGAGCTCTGTAGAACTTGACCCACATGCGGTTTCGTTGCTTACGCTGCCTTTGTTTCATGTTTTTGGCTTCTTTTTGTTGATAAATGAATT TCGGTGGGGGAAGACGTTGGTTTTGACGGAGAGGTTTGATTTTGAGCAAGTGTTGAAGGTTGTAGAGAGATATAGAGTGAGTGACATGCCTGTGTCGCCA ACCATTATCCTGACATTACTGAAATCGGATTTGACTAACAAGTATGATTTGAGTTCATTGCGGAGGTTTAGTTGCGGTGGCGCGCCATTGAGTAAAGAGG TTGCAGAAAAATTCGAAAGGAAATTTCCACAGGCTGAAATAATGCAGGGGTATGGATTAACGGAGGCTGGAGCTGTATCTAGGATAATAGGACCTGAAGA ATGTAACCAGCATGCTTCTGTTGGTCGGTTGTTTGGAAATATGGAAGCCAAAATCGTTGATCCTCTAACTGGAGAGGCCTTTGGTCCTGGCAAGAGAGGG GAGCTTTGGTTGCGAGGGCCATCCATTATGAAAGGTTATGTAGGAGATGAGAAGGCAACTGCCGAAACCTTGGATTCAGAAGGGTGGTTAAAGACCGGGG ATCTTTGTTTGTTTGACTCCGAGGGCTTCCTCTACATTGTTGATAGGCTAAAGGAATTGATAAAGTACAAGGCATATCAGGTGCCCCCTTTTGAGTTGGA ACAATTGCTGCTGTCCAATCCTGAGATTGCCGATGCTGCTGTAATTCCGTATCCTGATGAAGAGGCAGGGCAAATCCCCGTGGCCTATGTGGTGAGGAAA CCAGGAAGCAGTATTACCGAGGCTCAAATCATGGATTCCATTGCAAAACAGGTTGCACCATACAAGAAGATAAGACGAGTGGCTTTTACTGATGCGATCC CCAGATCTCCTGCCGGAAAGATCTTGAGGCGGGAGCTCGTCAATCATGCTCTCTCCGGTGCTCTCTGTAAATCATAA
AA sequence Show only first row Show all	>Potri.012G094900.1 pacid=42784048 polypeptide=Potri.012G094900.1.p locus=Potri.012G094900 ID=Potri.012G094900.1.v4.1 annot-version=v4.1 MATKSVPAQETTMTTHAINITKGGYCLESKTFQSLIPPATPPPPHQPLSITQFILSLLHSSAIPTTQKNYLIMPSTGQSLTYSQSINQIYSLSSSLKSLY NLNKNDVSFILCPPSLHVPIIYLSLLYLGVTISPANPLSSNSELTHQIQLSKPKIAFATSQTAHKLPSFPLGTILIDSPEFISLLTQISKRDSATNHVEV SQSDMAAILYSSGTTGRVKGVSLTHRNVIASIAAFQMSSVELDPHAVSLLTLPLFHVFGFFLLINEFRWGKTLVLTERFDFEQVLKVVERYRVSDMPVSP TIILTLLKSDLTNKYDLSSLRRFSCGGAPLSKEVAEKFERKFPQAEIMQGYGLTEAGAVSRIIGPEECNQHASVGRLFGNMEAKIVDPLTGEAFGPGKRG ELWLRGPSIMKGYVGDEKATAETLDSEGWLKTGDLCLFDSEGFLYIVDRLKELIKYKAYQVPPFELEQLLLSNPEIADAAVIPYPDEEAGQIPVAYVVRK PGSSITEAQIMDSIAKQVAPYKKIRRVAFTDAIPRSPAGKILRRELVNHALSGALCKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094900 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	4.00	0.8345
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	6.00	0.7618
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	8.71	0.7661	RAD50.1
AT3G24180			Beta-glucosidase, GBA2 type fa...		Potri.003G178000 [exp]	12.96	0.7561
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	20.07	0.7245
AT1G32090			early-responsive to dehydratio...		Potri.003G099800 [exp]	21.00	0.7154
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	25.92	0.7369
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	27.20	0.7428
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	27.49	0.7248
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	29.08	0.7172

Compare expression of checked genes

Potri.012G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.