Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 615 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 445 / 2e-151 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 437 / 5e-148 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 427 / 2e-144 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 413 / 1e-138 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 388 / 4e-129 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 358 / 4e-117 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 320 / 1e-102 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 313 / 1e-99 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G51680 295 / 1e-92 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094900 [exp] 1039 / 0 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 767 / 0 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 716 / 0 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 563 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 496 / 4e-171 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 425 / 5e-143 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 424 / 1e-142 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 416 / 6e-140 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 409 / 3e-137 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 617 / 0 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 475 / 4e-163 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 402 / 3e-134 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 400 / 2e-133 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 400 / 7e-131 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 392 / 3e-130 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 385 / 5e-128 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 383 / 5e-127 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10038667 [exp] 379 / 7e-125 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 349 / 7e-114 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G095000.1 pacid=42783039 polypeptide=Potri.012G095000.1.p locus=Potri.012G095000 ID=Potri.012G095000.1.v4.1 annot-version=v4.1 ATGGCCACAAAGTCAGTGCTGGCACAAGAAACCACCATGACCACCCATGCAATCAATATTACAAAAGGTGGTTACTGCTTGGAAAGTAAAACCTTTCAAA GTCTTAGACCACCTGCTACTCCACCACCACCGCATCAACCTCTCTCCATAACCCAATTCATCCTTTCTCTCCTCCACTCCTCTGCCATCCCAACCACCCA AAAAAACTTCCTTATCATGCCTTCCACACGTCAATCTCTCACTTACTCTGAAGCCATCAACCAGATTTACTCTCTTTCTTCATCTCTCAAGAGTCTCTAC AATTTAAACAAGAACGATGTCTCTTTTATCCTCTGCCCGCCCTCTCTCCACGTCCCCATTATTTATCTCTCTCTTCTTTACCTTGGTGTCACCATCTCTC CTGCCAACCCCCTAAGTTCGAACTCCGAGCTGACTCACCAAATCCAACTCAGCAAACCCAAGATCGCATTTGCTACTTCCCAAACTGCCCACAAGCTTCC CTCTTTTCCCCTTGGCACAATCCTCATTGACTCCCCTGAGTTCATCTCCTTGTTGACTCAAATCTCCAAACGAGACTGTGCTACCAACCACGTTGAAGTG AGTCAATCCGACATGGCAGCGATCCTATATTCCTCGGGAACAACTGGGAGAGTCAAAGGCGTGTCATTGACTCACAGGAACGTAATAGCTCCAATCGCGG CTTTTCAAAAGAGCTCTGCAGAACTTGACCCACATGCGGTTTCGTTGCTTACGCTGCCTTTGTTTCATGTTTTTGGCTTCTTTTTGTTGATAAATGAATT TCGGTGGGGGAAGACGTTGGTTTTGACGGAGAGGTTTGATTTTGAGCAAGTGTTGAAGGTTGTAGAGAGATATAGAGTGAGTGACATGCCTGTGTCGCCA ACCATTATCCTGACATTACTGAAATCGGATTTGACTAACAAGTATGATTTGAGTTCATTGCGGAGGTTCAGTTGCGGTGGCGCGCCATTGAGCAAGGAGG TTGCAGAAAAATTCAAAAGGAAATTTCCACAGGCTGAAATAATGCAGGGGTATGGATTAACGGAGGCTGGAGCTGTATCTAGGATAATAGGACCTGAAGA ATGTAACCGGCATGCTTCTGTTGGTCGGTTGTGTGGAAATATGGAAGCCAAAATTGTTGATCCTCTAACTGGAGAGGCCTTTGGTCCTGGCAAGAGAGGG GAGCTTTGGTTGCGAGGGCCATCCATTATGAAAGGTTATGTAGGAGATGAGAAGGCAACTGCCGAAACCTTGGATTCAGAAGGGTGGTTAAAGACAGGGG ATCTTTGTTTCTTTGACTCCGAGGGCTTCCTCTACATTGTTGATAGGCTGAAGGAATTGATAAAGTACAAGGCATATCAGGTGCCCCCTGTTGAGTTGGA ACAATTGCTGCTGTCTAATCCTGAGATTGCCGATGCTGCTGTAATTCCGTATCCTGATGAAGAGGCAGGGCAAATTCCCATGGCCTATGTGGTGAGGAAA CCAGGAAGCAATATTACTGAGGCTCAAATCATGGATTCCATTGCAAAACAGGTTGCACCATACAAGAAGATACGACGAGTGGCTTTTACTGATGCGGTCC CCAGATCTCCTGCCGGAAAGATCTTGAGGCGGGAGCTCATCAATCATGCTCTCTCCGGTGCTCTCTGTAAATTATAA
AA sequence Show only first row Show all	>Potri.012G095000.1 pacid=42783039 polypeptide=Potri.012G095000.1.p locus=Potri.012G095000 ID=Potri.012G095000.1.v4.1 annot-version=v4.1 MATKSVLAQETTMTTHAINITKGGYCLESKTFQSLRPPATPPPPHQPLSITQFILSLLHSSAIPTTQKNFLIMPSTRQSLTYSEAINQIYSLSSSLKSLY NLNKNDVSFILCPPSLHVPIIYLSLLYLGVTISPANPLSSNSELTHQIQLSKPKIAFATSQTAHKLPSFPLGTILIDSPEFISLLTQISKRDCATNHVEV SQSDMAAILYSSGTTGRVKGVSLTHRNVIAPIAAFQKSSAELDPHAVSLLTLPLFHVFGFFLLINEFRWGKTLVLTERFDFEQVLKVVERYRVSDMPVSP TIILTLLKSDLTNKYDLSSLRRFSCGGAPLSKEVAEKFKRKFPQAEIMQGYGLTEAGAVSRIIGPEECNRHASVGRLCGNMEAKIVDPLTGEAFGPGKRG ELWLRGPSIMKGYVGDEKATAETLDSEGWLKTGDLCFFDSEGFLYIVDRLKELIKYKAYQVPPVELEQLLLSNPEIADAAVIPYPDEEAGQIPMAYVVRK PGSNITEAQIMDSIAKQVAPYKKIRRVAFTDAVPRSPAGKILRRELINHALSGALCKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094900 [exp]	4.00	0.8345
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.001G139900 [exp]	4.00	0.8532
AT5G02420			unknown protein		Potri.006G084700 [exp]	4.24	0.8300
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	6.48	0.8469
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	8.83	0.8405
AT5G47530			Auxin-responsive family protei...		Potri.014G161900 [exp]	11.87	0.8133
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	14.07	0.8437
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019300 [exp]	19.07	0.8223
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	20.12	0.8007
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	20.37	0.8507

Compare expression of checked genes

Potri.012G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.