Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29320 457 / 2e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 43 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 43 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 42 / 0.0006 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092400 [exp] 679 / 0 AT1G29320 497 / 7e-175 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 47 / 2e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 47 / 3e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 42 / 0.0005 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G136000 [exp] 42 / 0.001 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023861 [exp] 503 / 4e-178 AT1G29320 455 / 2e-158 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020991 [exp] 445 / 3e-156 AT1G29320 413 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 45 / 0.0001 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 45 / 0.0001 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 44 / 0.0002 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 42 / 0.0008 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10037500 [exp] 42 / 0.0008 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10041007 [exp] 42 / 0.001 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G095100.1 pacid=42784223 polypeptide=Potri.012G095100.1.p locus=Potri.012G095100 ID=Potri.012G095100.1.v4.1 annot-version=v4.1 ATGCCGCGAACTACGACACTAGAGTGCCCAGGTTGCCCTCCACTTCGAGCTCTAACTTTTGATTCTCTGGGTCTTATCAAAGTGATTGAGTCTCGTGGTG AAAGAGGAACACCTCAGGTTGTAGAGAGATGGGGTGATCCTGTTTCCTCCAAATGCGTGCTTGCTGCTTCCTTTGATGACCGTAAAAAAGACCCTTTATT GGCTGTTGCAAGAAGAAATAGAGAGGTTGAAGTAGTCAACCCGCTTAATGGGGAGATTCATGTCGTGTTTTCTAATGTTGGTGAGGATGGTGTTCAACCT GAAGATGATGCTATTTCTGGTTTGCATTTATTCAGGAGAGAGAGGTCATCTGGGTCATGTACTTTGCTTACATGTACATCAAAAGGAAATGCAAGCGTGA GGTCTATTGGGGTTGATAAATTGACTGCTGATAGTGCCAGTATTAGTGTAACAAAGACATGGAAAGTTTGTGGTTCTGGTAATGTCTTATGTTCTAAAGT GGATGGAAGTGAAAACTATGCGGTGTTTGGAGGGAAAGGTGTTGAAGTTAATCTATGGGACCTTGAGAATTCTACTAAAATTTGGACTGCCAAACCCCCT CCTAAAAATAGCCTTGGGATATTTACCCCGACTTGGTTTACATGCACGACATTCCTGAGTAATGATGATCACCATAAATTTGTGGCTGGCACCAATAGTC ATCAGGTCCATTTGTATGATATTTCTGCTCAGCGCAGACCTGTTCTATCATTTGATTTCAGAGAGACTGCTATTAAGGCCGTTACTGAAGATCAAGATGG CCATACTATATATATAGGAAATGGATCCGGTGACCTTGCTTCATTCGACATGCGAACTGGAAAGCTGTTAGGATGTTTTATAGGGAAGTGTTCTGGAAGT ATTAGATCCATTGCCAGGCACCCAGAGCTCCCTGTGATAGCATCATGCGGTTTGGATAGCTATTTGCGGCTGTGGGATATAAAGACTCGTCAACTTCTTT CAGCGGTTTTCTTGAAGCAGCACCTTACAAATGTTGTTTTTGATTCAAACTTTGTTGACAAAGAAGTTGCAGCAACAGCACAGAATGCCAATGAGATCCA AACTACCGAGGTCCAAACTGAAGATGAGATGGGAACATTGCGTGTAAAAAGAAAGAAGGCATCTAAAGAAAAAAGGGAGAAAAAGAAGAAATCTGAAGAA AGTAAAGAAACCATCGTGTTAAAATCCAAGAAAAAGAGCCGGAAGCACAAAAGAGAGATTTGTGATGACTCCTGA
AA sequence Show only first row Show all	>Potri.012G095100.1 pacid=42784223 polypeptide=Potri.012G095100.1.p locus=Potri.012G095100 ID=Potri.012G095100.1.v4.1 annot-version=v4.1 MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERGTPQVVERWGDPVSSKCVLAASFDDRKKDPLLAVARRNREVEVVNPLNGEIHVVFSNVGEDGVQP EDDAISGLHLFRRERSSGSCTLLTCTSKGNASVRSIGVDKLTADSASISVTKTWKVCGSGNVLCSKVDGSENYAVFGGKGVEVNLWDLENSTKIWTAKPP PKNSLGIFTPTWFTCTTFLSNDDHHKFVAGTNSHQVHLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGKCSGS IRSIARHPELPVIASCGLDSYLRLWDIKTRQLLSAVFLKQHLTNVVFDSNFVDKEVAATAQNANEIQTTEVQTEDEMGTLRVKRKKASKEKREKKKKSEE SKETIVLKSKKKSRKHKREICDDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	0	1
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	2.00	0.9091
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	2.82	0.8903
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	4.47	0.9031
					Potri.005G152000 [exp]	9.21	0.8885
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	11.66	0.8712
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	12.40	0.8832
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	13.78	0.8604
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	14.69	0.8536
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	14.83	0.8585
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	15.49	0.8208

Compare expression of checked genes

Potri.012G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.