Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63390 288 / 3e-95 O-fucosyltransferase family protein (.1) AT2G44500 217 / 2e-69 O-fucosyltransferase family protein (.1.2) AT3G07900 192 / 3e-58 O-fucosyltransferase family protein (.1) AT1G20550 105 / 3e-26 O-fucosyltransferase family protein (.1) AT1G76270 105 / 3e-26 O-fucosyltransferase family protein (.1) AT4G38390 99 / 7e-24 RHS17 root hair specific 17 (.1) AT5G65470 98 / 1e-23 O-fucosyltransferase family protein (.1) AT5G35570 95 / 1e-22 O-fucosyltransferase family protein (.1) AT5G01100 94 / 2e-22 O-fucosyltransferase family protein (.1) AT1G04910 94 / 3e-22 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092600 [exp] 342 / 2e-116 AT5G63390 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G227000 [exp] 235 / 1e-74 AT2G44500 754 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.009G022500 [exp] 234 / 2e-74 AT2G44500 744 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.002G011100 [exp] 103 / 8e-26 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 103 / 1e-25 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 102 / 2e-25 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 101 / 5e-25 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 100 / 1e-24 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 100 / 2e-24 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003914 [exp] 228 / 5e-72 AT2G44500 765 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10037475 [exp] 183 / 7e-56 AT2G44500 672 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10014444 [exp] 112 / 1e-28 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 109 / 1e-27 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 109 / 1e-27 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 102 / 3e-25 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 102 / 4e-25 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 102 / 5e-25 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 101 / 7e-25 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 100 / 2e-24 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G095166.1 pacid=42783452 polypeptide=Potri.012G095166.1.p locus=Potri.012G095166 ID=Potri.012G095166.1.v4.1 annot-version=v4.1 ATGGCAAAGAGTTTAATGGCGCCATTACCACTGCTGCCAGTTACTGGCAATGTGTCAAAAGAGGAGAGAGGTTTCTGGGGGCAACCAGATGGAGAAGGGT ACAAGCCATACTTGCATTTTAGTCTCAAGTATCGAAAGGCATCTGCGAGAATTGCGAAGGAGAGGAGGTTGTTCTTGGTGGTGGTAGCCTCAGGGGGACT GAACCATCGGAGGAATCAGATTGTTTATGCTGTTGTTATTGCAAGAAATCTTGAAGCAGCTTTGGTTGCGCCCGTTTTGAAGGTTAATCCAATTTGGGGT GATGAGAGTGAATTCTCGGAGATTTTCAATGCTGAGCATTTCAAGAGAGTTTTACGAGCTGATGTACAAATTGTATCATCCCTTCCCTCCGAACATTTGA TGTCAAAGCAGTCCATAGAAAACCAAATTCCTTATGATGTCTCACCAAATTGGATCCGTGCCAGGTGGTTTATGTATCTGAATGAAGAAAGTCTGCTTAT CCTAAAAGAATTAGACTCCAAACTTTCCAAGAATCTTCCACTCGATCTGCAGAAGCTGCGATGCAAGGTTGCATTCCATGCGCTGAGATTTGCGGCACCC ATATAG
AA sequence Show only first row Show all	>Potri.012G095166.1 pacid=42783452 polypeptide=Potri.012G095166.1.p locus=Potri.012G095166 ID=Potri.012G095166.1.v4.1 annot-version=v4.1 MAKSLMAPLPLLPVTGNVSKEERGFWGQPDGEGYKPYLHFSLKYRKASARIAKERRLFLVVVASGGLNHRRNQIVYAVVIARNLEAALVAPVLKVNPIWG DESEFSEIFNAEHFKRVLRADVQIVSSLPSEHLMSKQSIENQIPYDVSPNWIRARWFMYLNEESLLILKELDSKLSKNLPLDLQKLRCKVAFHALRFAAP I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63390			O-fucosyltransferase family pr...		Potri.012G095166 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	3.16	0.7501	IDH1.2
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	7.54	0.7275
					Potri.006G072950 [exp]	15.32	0.7618
AT4G20790			Leucine-rich repeat protein ki...		Potri.011G157600 [exp]	24.00	0.7228
AT5G49610			F-box family protein (.1)		Potri.015G028500 [exp]	24.24	0.6768
AT3G11690			unknown protein		Potri.016G066300 [exp]	34.89	0.6444
AT2G27285			Coiled-coil domain-containing ...		Potri.004G201300 [exp]	52.96	0.6729
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	84.07	0.6353
					Potri.003G056450 [exp]	91.19	0.6222
AT5G66815			unknown protein		Potri.014G034500 [exp]	98.10	0.6313

Compare expression of checked genes

Potri.012G095166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.