Plant FIBer expression Database

Potri.012G095200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60160 810 / 0 Zn-dependent exopeptidases superfamily protein (.1)
AT5G04710 595 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G092700
[exp]
923 / 0 AT5G60160 818 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.008G021700
[exp]
590 / 0 AT5G04710 785 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.010G237667
[exp]
40 / 0.0004 AT5G04710 54 / 7e-10 Zn-dependent exopeptidases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022460
[exp]
807 / 0 AT5G60160 800 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10016765
[exp]
779 / 0 AT5G60160 774 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10034142
[exp]
561 / 0 AT5G04710 796 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF02127 Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18)
Representative CDS sequence
>Potri.012G095200.1 pacid=42783884 polypeptide=Potri.012G095200.1.p locus=Potri.012G095200 ID=Potri.012G095200.1.v4.1 annot-version=v4.1
ATGCAAAAAATGCAAGAGAACTCCGTTGCTTCTGAACTCATCAACTTCTTAAACGCTTCTCCAACCGCTTTTCACGCCGTCGAGGAGGCAAAGAGGAGAC
TGAGAAATGCGGGATACGAGCAAGTTTCAGAGAGACAAGATTGGGATTTGGAAGCTGGAAAGCGTTATTTCTTCACTAGGAATCACTCTACTATCGTTGC
TTTCGCTATTGGTAACAAATTTGAAGCTGGGAATGGATTTTATATAGTTGGTGCCCATACAGATAGTCCTTGTCTCAAGTTGAAGCCAGTTTCCAAGGTT
ACGAAAGGTGGGTATTTGAAGGTTGGAGTCCAAACATATGGAAGTGGTTTGTGGCATACATGGTTCGATCGTGACTTGACAGTAGCAGGAAGGGTGATTG
TAAAAGAAGAAAAGGATGGTTCAGTTTCCTACTCCCATCGGCTAGTTAGAATTGAGGAACCCATTTTGCGTGTCCCTACCATCGCAATTCACTTAGACAG
GAATGTTAACAGTGATGGATTCAAGGTGAACACAGAGACTCAACTTCTTCCTGTCTTGGCAACATCAATTAAGACAGAGCTCAATAAAGCAGTTGCTGAA
AGTGGTCCAGTTAAGAGTGAAGAAATTCAAGTTGATGGGAAGAAATCTGATATAGGAATGATTAACTCAAAGCATCACTCACTTGTACTTGAGATGATTG
CTAATCAGATTGGGTGCAAAGTAGACGATATATGTGACTTTGAATTACAAGTATGTGATACTCAACCAAGTGTAATAGCTGGAGCTGCAAAGGAATTTAT
TTTCTCTGGAAGGCTCGATAACCTCTGCAGCTCATTCTGCTCTCTGAAGGCACTGATAGATGCAACATCTACTGAAAGTGACCTTAAGGATGAGAGTGGT
GTTAGGATGGTGGCGTTGTTTGACCATGAAGAGGTAGGATCTGATTCAGCACAAGGAGCCGGGTCTCCTGTCATGCTAGATGCTCTATCACGAATCACAA
GCTCCTTTGATTCAGATTCCAAGCTGCTTCCAAAGGCTATTCAGATGAGTTACCTTGTATCTGCTGACATGGCACATGCTCTCCATCCTAATTATATGGA
CAAACATGAAGATAATCATCAGCCCAAGCTGCATGGTGGGCTTGTAATCAAACACAACGCGAATCAGCGCTACGCAACAAATGCAGTCACTTCCTTTTTA
TTTAGGGAGATAGCGACAAAGCATAACCTTCCCACCCAGGATTTTGTGGTCCGCAATGACATGGCCTGTGGTTCAACTATTGGTCCAATACTAGCAAGCG
GTGTTGGGATTCGTACTGTTGATGTTGGTGCTCCACAACTATCGATGCACAGTATAAGAGAGATGTGTGCTGTTGATGATGTCAAGCACTCCTATGAGCA
TTTCAAGGCATTTTTCCAAGAGTTCTCTGATCTGGATGCTAAGATTACAGTAGATATGTAG
AA sequence
>Potri.012G095200.1 pacid=42783884 polypeptide=Potri.012G095200.1.p locus=Potri.012G095200 ID=Potri.012G095200.1.v4.1 annot-version=v4.1
MQKMQENSVASELINFLNASPTAFHAVEEAKRRLRNAGYEQVSERQDWDLEAGKRYFFTRNHSTIVAFAIGNKFEAGNGFYIVGAHTDSPCLKLKPVSKV
TKGGYLKVGVQTYGSGLWHTWFDRDLTVAGRVIVKEEKDGSVSYSHRLVRIEEPILRVPTIAIHLDRNVNSDGFKVNTETQLLPVLATSIKTELNKAVAE
SGPVKSEEIQVDGKKSDIGMINSKHHSLVLEMIANQIGCKVDDICDFELQVCDTQPSVIAGAAKEFIFSGRLDNLCSSFCSLKALIDATSTESDLKDESG
VRMVALFDHEEVGSDSAQGAGSPVMLDALSRITSSFDSDSKLLPKAIQMSYLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFL
FREIATKHNLPTQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSDLDAKITVDM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G60160 Zn-dependent exopeptidases sup... Potri.012G095200
[exp]
0 1
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.010G246800
[exp]
6.55 0.8802
AT2G02990 RNS1, ATRNS1 ribonuclease 1 (.1) Potri.013G134400
[exp]
15.19 0.8592
Potri.007G146700
[exp]
18.11 0.7412
AT5G45480 Protein of unknown function (D... Potri.010G154932
[exp]
18.27 0.7401
AT4G21310 Protein of unknown function (D... Potri.004G031200
[exp]
24.08 0.8499
AT4G15450 Senescence/dehydration-associa... Potri.006G164748
[exp]
26.32 0.8454
AT1G60500 DRP4C Dynamin related protein 4C (.1... Potri.003G024200
[exp]
26.83 0.8105
AT5G66600 Protein of unknown function, D... Potri.004G150000
[exp]
27.92 0.8366
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.012G090400
[exp]
30.29 0.8465
AT1G68330 unknown protein Potri.008G122300
[exp]
31.22 0.8254

Potri.012G095200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.